PlantSME Plant secondary metabolism enzyme database

Jamesoniella autumnalis (jamesoniella_autumnalis)

Imported from atlas release summary for Jamesoniella autumnalis.

693
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 24.68% Alkaloid pathway 23.95% Phenylpropanoid pathway 23.52% Flavonoid pathway 11.4% Rosmarinic acid pathway 9.52% Steroid pathway 6.93%
Family Distribution
C4H 6.26% C3'H/CYP98A 5.52% 4CL 4.77% BAHD 4.72% CYP76 4.62% POD 4.19% F3H 3.61% STR 3.4%
Other Families 62.92%
More Families (97)
NMT 57 3.02% H6H 54 2.86% IFS 53 2.81% IFR 45 2.39% BR6OX2/CYP85A2 45 2.39% T3O 43 2.28% UGT 41 2.18% DWF4/CYP90B1 39 2.07% 7DLGT 38 2.02% UFGT 36 1.91% TRI/TRII 34 1.8% GS 33 1.75% F3'H/CYP75B 30 1.59% F3'5'H/CYP75A 24 1.27% G8O/G8H 22 1.17% COMT 22 1.17% HCT 21 1.11% CODM/T6ODM 20 1.06% CAS 20 1.06% SMT1/SMT2/SMT3 20 1.06% T16H 18 0.95% CAD 18 0.95% FNS 16 0.85% IO 15 0.8% COR 15 0.8% PYKS 15 0.8% PAL 15 0.8% RAS 15 0.8% LAMT 14 0.74% CNMT 13 0.69% TAT 13 0.69% TPS 13 0.69% LAC 12 0.64% CPD/CYP90A1 12 0.64% SLS 11 0.58% CSE 11 0.58% CYP71 11 0.58% SGD 10 0.53% 16OMT 10 0.53% CHS 10 0.53% CPR 10 0.53% GES 9 0.48% CYP719 9 0.48% F5H/CYP84A 9 0.48% PMT 8 0.42% 8HGO 8 0.42% BR6OX1/CYP85A1 8 0.42% CYP90D1 8 0.42% 7DLH 7 0.37% MPO 6 0.32% CYP80B1 6 0.32% NCS 6 0.32% ANR 6 0.32% CCR 6 0.32% GGPPS 6 0.32% AACT 6 0.32% BBE 5 0.27% ANS/LDOX 5 0.27% HPPR 5 0.27% DWF7 5 0.27% ADC 4 0.21% SQS/FDFT1 4 0.21% DWF1 4 0.21% FPPS 4 0.21% MVD 4 0.21% MCT/IspD 4 0.21% TDC 3 0.16% ISY 3 0.16% DFR 3 0.16% CHI 3 0.16% ROT3/CYP90C1 3 0.16% SMO1/SMO2 3 0.16% PMK 3 0.16% MVK 3 0.16% 6OMT_4OMT_SOMT 2 0.11% XMT_MXMT_DXMT 2 0.11% FLS 2 0.11% CCoAOMT 2 0.11% DET2 2 0.11% DWF5 2 0.11% CYP51G1 2 0.11% SQE 2 0.11% DXS 2 0.11% GPPS 2 0.11% HMGR 2 0.11% IDI 2 0.11% DXR 2 0.11% ODC 1 0.05% TYDC_DDC 1 0.05% FK 1 0.05% HYD1 1 0.05% CPI1 1 0.05% HMGS 1 0.05% HDS/IspG 1 0.05% CMK/IspE 1 0.05% MDS/IspF 1 0.05% HDR/IspH 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 171 20 BAHD (58) View species results
Alkaloid pathway 166 21 H6H (23) View species results
Phenylpropanoid pathway 163 11 POD (72) View species results
Flavonoid pathway 79 10 UFGT (29) View species results
Rosmarinic acid pathway 66 7 C4H (28) View species results
Steroid pathway 48 10 CAS (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 684 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 125 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CCR
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Gene Pathway Family Confidence Status Best Target
Jaut4037690020560 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Jaut4723590061230 Phenylpropanoid CCR low borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Jaut4896060108850 Phenylpropanoid CCR medium borderline CCR__00001__sp_A0A059TC02_CCR1_PETHY
Jaut4929920138180 Phenylpropanoid CCR low borderline CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Jaut4957970180730 Phenylpropanoid CCR low borderline CCR__00009__sp_Q9SAH9_CCR2_ARATH
Jaut4975730209380 Phenylpropanoid CCR medium borderline CCR__00007__sp_Q9CA28_TKPR2_ARATH