Jamesoniella autumnalis (jamesoniella_autumnalis)
Imported from atlas release summary for Jamesoniella autumnalis.
693
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
693
Candidate Genes
C4H
6.26%
C3'H/CYP98A
5.52%
4CL
4.77%
BAHD
4.72%
CYP76
4.62%
POD
4.19%
F3H
3.61%
STR
3.4%
Other Families
62.92%
More Families (97)
NMT
57
3.02%
H6H
54
2.86%
IFS
53
2.81%
IFR
45
2.39%
BR6OX2/CYP85A2
45
2.39%
T3O
43
2.28%
UGT
41
2.18%
DWF4/CYP90B1
39
2.07%
7DLGT
38
2.02%
UFGT
36
1.91%
TRI/TRII
34
1.8%
GS
33
1.75%
F3'H/CYP75B
30
1.59%
F3'5'H/CYP75A
24
1.27%
G8O/G8H
22
1.17%
COMT
22
1.17%
HCT
21
1.11%
CODM/T6ODM
20
1.06%
CAS
20
1.06%
SMT1/SMT2/SMT3
20
1.06%
T16H
18
0.95%
CAD
18
0.95%
FNS
16
0.85%
IO
15
0.8%
COR
15
0.8%
PYKS
15
0.8%
PAL
15
0.8%
RAS
15
0.8%
LAMT
14
0.74%
CNMT
13
0.69%
TAT
13
0.69%
TPS
13
0.69%
LAC
12
0.64%
CPD/CYP90A1
12
0.64%
SLS
11
0.58%
CSE
11
0.58%
CYP71
11
0.58%
SGD
10
0.53%
16OMT
10
0.53%
CHS
10
0.53%
CPR
10
0.53%
GES
9
0.48%
CYP719
9
0.48%
F5H/CYP84A
9
0.48%
PMT
8
0.42%
8HGO
8
0.42%
BR6OX1/CYP85A1
8
0.42%
CYP90D1
8
0.42%
7DLH
7
0.37%
MPO
6
0.32%
CYP80B1
6
0.32%
NCS
6
0.32%
ANR
6
0.32%
CCR
6
0.32%
GGPPS
6
0.32%
AACT
6
0.32%
BBE
5
0.27%
ANS/LDOX
5
0.27%
HPPR
5
0.27%
DWF7
5
0.27%
ADC
4
0.21%
SQS/FDFT1
4
0.21%
DWF1
4
0.21%
FPPS
4
0.21%
MVD
4
0.21%
MCT/IspD
4
0.21%
TDC
3
0.16%
ISY
3
0.16%
DFR
3
0.16%
CHI
3
0.16%
ROT3/CYP90C1
3
0.16%
SMO1/SMO2
3
0.16%
PMK
3
0.16%
MVK
3
0.16%
6OMT_4OMT_SOMT
2
0.11%
XMT_MXMT_DXMT
2
0.11%
FLS
2
0.11%
CCoAOMT
2
0.11%
DET2
2
0.11%
DWF5
2
0.11%
CYP51G1
2
0.11%
SQE
2
0.11%
DXS
2
0.11%
GPPS
2
0.11%
HMGR
2
0.11%
IDI
2
0.11%
DXR
2
0.11%
ODC
1
0.05%
TYDC_DDC
1
0.05%
FK
1
0.05%
HYD1
1
0.05%
CPI1
1
0.05%
HMGS
1
0.05%
HDS/IspG
1
0.05%
CMK/IspE
1
0.05%
MDS/IspF
1
0.05%
HDR/IspH
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 171 | 20 | BAHD (58) | View species results |
| Alkaloid pathway | 166 | 21 | H6H (23) | View species results |
| Phenylpropanoid pathway | 163 | 11 | POD (72) | View species results |
| Flavonoid pathway | 79 | 10 | UFGT (29) | View species results |
| Rosmarinic acid pathway | 66 | 7 | C4H (28) | View species results |
| Steroid pathway | 48 | 10 | CAS (20) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 684 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 125 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Jaut4960390184570 | Alkaloid | NMT | low | borderline |
| Jaut4963920190760 | Alkaloid | NMT | medium | pass |
| Jaut4970050200380 | Alkaloid | NMT | low | borderline |
| Jaut4972920205230 | Alkaloid | NMT | medium | borderline |
| Jaut5208280219490 | Alkaloid | NMT | medium | borderline |
| Jaut5208290219530 | Alkaloid | NMT | medium | borderline |
| Jaut4466220039000 | Alkaloid | ODC | medium | pass |
| Jaut4155590025880 | Alkaloid | PMT | medium | pass |
| Jaut4158580026150 | Alkaloid | PMT | low | borderline |
| Jaut4725410061990 | Alkaloid | PMT | low | borderline |
| Jaut4804430075860 | Alkaloid | PMT | medium | borderline |
| Jaut4818030079230 | Alkaloid | PMT | low | borderline |
| Jaut4903990114300 | Alkaloid | PMT | low | borderline |
| Jaut4954500173600 | Alkaloid | PMT | low | borderline |
| Jaut4967200196020 | Alkaloid | PMT | low | borderline |
| Jaut4142950023800 | Alkaloid | PYKS | high | pass |
| Jaut4703330058160 | Alkaloid | PYKS | low | borderline |
| Jaut4721980060720 | Alkaloid | PYKS | low | borderline |
| Jaut4869370093900 | Alkaloid | PYKS | low | borderline |
| Jaut4870340094440 | Alkaloid | PYKS | high | pass |
| Jaut4870920094600 | Alkaloid | PYKS | high | pass |
| Jaut4870920094610 | Alkaloid | PYKS | high | pass |
| Jaut4874170095910 | Alkaloid | PYKS | low | borderline |
| Jaut4904360114570 | Alkaloid | PYKS | high | pass |
| Jaut4934270143570 | Alkaloid | PYKS | low | borderline |
| Jaut4944030156820 | Alkaloid | PYKS | low | borderline |
| Jaut4965270192910 | Alkaloid | PYKS | medium | pass |
| Jaut4973630206340 | Alkaloid | PYKS | high | pass |
| Jaut4995300213110 | Alkaloid | PYKS | high | pass |
| Jaut4995310213120 | Alkaloid | PYKS | high | pass |
| Jaut4083720021480 | Alkaloid | SGD | medium | pass |
| Jaut4784260072790 | Alkaloid | SGD | medium | pass |
| Jaut4868430093290 | Alkaloid | SGD | low | borderline |
| Jaut4880680099220 | Alkaloid | SGD | medium | pass |
| Jaut4930490138860 | Alkaloid | SGD | medium | pass |
| Jaut4930490138880 | Alkaloid | SGD | medium | pass |
| Jaut4947240160310 | Alkaloid | SGD | medium | pass |
| Jaut4951370166160 | Alkaloid | SGD | low | borderline |
| Jaut4953660171330 | Alkaloid | SGD | low | borderline |
| Jaut4958070180870 | Alkaloid | SGD | medium | pass |
| Jaut3754980015720 | Alkaloid | SLS | medium | borderline |
| Jaut4703350058180 | Alkaloid | SLS | medium | borderline |
| Jaut4750660065850 | Alkaloid | SLS | low | borderline |
| Jaut4896180108940 | Alkaloid | SLS | medium | borderline |
| Jaut4899540111290 | Alkaloid | SLS | medium | borderline |
| Jaut4917290125280 | Alkaloid | SLS | medium | borderline |
| Jaut4925190133620 | Alkaloid | SLS | medium | borderline |
| Jaut4940100151190 | Alkaloid | SLS | medium | borderline |
| Jaut4951150165570 | Alkaloid | SLS | medium | borderline |
| Jaut4965590193410 | Alkaloid | SLS | medium | borderline |