Juglans cinerea (juglans_cinerea)
/
Imported from atlas release summary for Juglans cinerea.
1750
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1750
Candidate Genes
C4H
6.3%
BAHD
5.56%
C3'H/CYP98A
5.2%
CYP76
4.19%
UGT
4.1%
4CL
3.71%
7DLGT
3.57%
POD
3.53%
Other Families
63.85%
More Families (98)
IFS
148
3.39%
UFGT
147
3.37%
F3H
134
3.07%
T3O
113
2.59%
DWF4/CYP90B1
108
2.47%
NMT
102
2.34%
F3'H/CYP75B
77
1.76%
BR6OX2/CYP85A2
75
1.72%
CAD
74
1.69%
CODM/T6ODM
73
1.67%
STR
71
1.63%
H6H
69
1.58%
TRI/TRII
64
1.47%
SMT1/SMT2/SMT3
63
1.44%
LAC
62
1.42%
HCT
53
1.21%
G8O/G8H
51
1.17%
T16H
49
1.12%
COMT
49
1.12%
TPS
49
1.12%
CAS
48
1.1%
FNS
47
1.08%
PYKS
44
1.01%
GS
43
0.98%
GES
41
0.94%
TAT
37
0.85%
CYP71
37
0.85%
F3'5'H/CYP75A
36
0.82%
IFR
36
0.82%
F5H/CYP84A
36
0.82%
CYP90D1
35
0.8%
IO
32
0.73%
7DLH
31
0.71%
LAMT
30
0.69%
PAL
30
0.69%
RAS
30
0.69%
ANR
28
0.64%
PMT
27
0.62%
SLS
26
0.6%
NCS
26
0.6%
16OMT
25
0.57%
CCR
25
0.57%
SGD
24
0.55%
CPD/CYP90A1
24
0.55%
CSE
23
0.53%
COR
20
0.46%
8HGO
18
0.41%
BR6OX1/CYP85A1
18
0.41%
CNMT
16
0.37%
CPR
16
0.37%
CHS
14
0.32%
DFR
14
0.32%
ROT3/CYP90C1
14
0.32%
CYP80B1
13
0.3%
ISY
12
0.27%
CYP719
10
0.23%
SQE
10
0.23%
FPPS
10
0.23%
ANS/LDOX
9
0.21%
CCoAOMT
8
0.18%
SQS/FDFT1
8
0.18%
GGPPS
8
0.18%
DXS
8
0.18%
MPO
7
0.16%
AACT
7
0.16%
TYDC_DDC
6
0.14%
HPPR
6
0.14%
CYP51G1
6
0.14%
MVD
6
0.14%
DET2
5
0.11%
MVK
5
0.11%
SMO1/SMO2
4
0.09%
CPI1
4
0.09%
TDC
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
ODC
3
0.07%
CHI
3
0.07%
FK
3
0.07%
DWF7
3
0.07%
PMK
3
0.07%
HMGS
3
0.07%
DXR
3
0.07%
HMGR
3
0.07%
BBE
2
0.05%
ADC
2
0.05%
XMT_MXMT_DXMT
2
0.05%
FLS
2
0.05%
DWF1
2
0.05%
HYD1
2
0.05%
MCT/IspD
2
0.05%
MDS/IspF
2
0.05%
HDR/IspH
2
0.05%
IDI
2
0.05%
CYP80F1
1
0.02%
DWF5
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 525 | 18 | BAHD (191) | View species results |
| Alkaloid pathway | 382 | 24 | 7DLGT (63) | View species results |
| Phenylpropanoid pathway | 363 | 12 | POD (138) | View species results |
| Flavonoid pathway | 236 | 11 | UFGT (142) | View species results |
| Rosmarinic acid pathway | 137 | 7 | 4CL (37) | View species results |
| Steroid pathway | 107 | 11 | SMT1/SMT2/SMT3 (43) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1625 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 326 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| juglans_cinerea_g11711.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g12142.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g13632.t1 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| juglans_cinerea_g13633.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g13634.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g13635.t1 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| juglans_cinerea_g13636.t1 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| juglans_cinerea_g18379.t1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| juglans_cinerea_g1941.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g21672.t1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| juglans_cinerea_g28231.t1 | Alkaloid | COR | low | borderline | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| juglans_cinerea_g3058.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g3059.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g3060.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g3063.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g3064.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g36148.t1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| juglans_cinerea_g37107.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g37223.t1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| juglans_cinerea_g9112.t1 | Alkaloid | COR | low | borderline | COR__00001__sp_B9VRJ2_COR15_PAPSO |