PlantSME Plant secondary metabolism enzyme database

Juglans cinerea (juglans_cinerea)

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Imported from atlas release summary for Juglans cinerea.

1750
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.0% Alkaloid pathway 21.83% Phenylpropanoid pathway 20.74% Flavonoid pathway 13.49% Rosmarinic acid pathway 7.83% Steroid pathway 6.11%
Family Distribution
C4H 6.3% BAHD 5.56% C3'H/CYP98A 5.2% CYP76 4.19% UGT 4.1% 4CL 3.71% 7DLGT 3.57% POD 3.53%
Other Families 63.85%
More Families (98)
IFS 148 3.39% UFGT 147 3.37% F3H 134 3.07% T3O 113 2.59% DWF4/CYP90B1 108 2.47% NMT 102 2.34% F3'H/CYP75B 77 1.76% BR6OX2/CYP85A2 75 1.72% CAD 74 1.69% CODM/T6ODM 73 1.67% STR 71 1.63% H6H 69 1.58% TRI/TRII 64 1.47% SMT1/SMT2/SMT3 63 1.44% LAC 62 1.42% HCT 53 1.21% G8O/G8H 51 1.17% T16H 49 1.12% COMT 49 1.12% TPS 49 1.12% CAS 48 1.1% FNS 47 1.08% PYKS 44 1.01% GS 43 0.98% GES 41 0.94% TAT 37 0.85% CYP71 37 0.85% F3'5'H/CYP75A 36 0.82% IFR 36 0.82% F5H/CYP84A 36 0.82% CYP90D1 35 0.8% IO 32 0.73% 7DLH 31 0.71% LAMT 30 0.69% PAL 30 0.69% RAS 30 0.69% ANR 28 0.64% PMT 27 0.62% SLS 26 0.6% NCS 26 0.6% 16OMT 25 0.57% CCR 25 0.57% SGD 24 0.55% CPD/CYP90A1 24 0.55% CSE 23 0.53% COR 20 0.46% 8HGO 18 0.41% BR6OX1/CYP85A1 18 0.41% CNMT 16 0.37% CPR 16 0.37% CHS 14 0.32% DFR 14 0.32% ROT3/CYP90C1 14 0.32% CYP80B1 13 0.3% ISY 12 0.27% CYP719 10 0.23% SQE 10 0.23% FPPS 10 0.23% ANS/LDOX 9 0.21% CCoAOMT 8 0.18% SQS/FDFT1 8 0.18% GGPPS 8 0.18% DXS 8 0.18% MPO 7 0.16% AACT 7 0.16% TYDC_DDC 6 0.14% HPPR 6 0.14% CYP51G1 6 0.14% MVD 6 0.14% DET2 5 0.11% MVK 5 0.11% SMO1/SMO2 4 0.09% CPI1 4 0.09% TDC 3 0.07% 6OMT_4OMT_SOMT 3 0.07% ODC 3 0.07% CHI 3 0.07% FK 3 0.07% DWF7 3 0.07% PMK 3 0.07% HMGS 3 0.07% DXR 3 0.07% HMGR 3 0.07% BBE 2 0.05% ADC 2 0.05% XMT_MXMT_DXMT 2 0.05% FLS 2 0.05% DWF1 2 0.05% HYD1 2 0.05% MCT/IspD 2 0.05% MDS/IspF 2 0.05% HDR/IspH 2 0.05% IDI 2 0.05% CYP80F1 1 0.02% DWF5 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 525 18 BAHD (191) View species results
Alkaloid pathway 382 24 7DLGT (63) View species results
Phenylpropanoid pathway 363 12 POD (138) View species results
Flavonoid pathway 236 11 UFGT (142) View species results
Rosmarinic acid pathway 137 7 4CL (37) View species results
Steroid pathway 107 11 SMT1/SMT2/SMT3 (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1625 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 326 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
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Gene Pathway Family Confidence Status Best Target
juglans_cinerea_g3184.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
juglans_cinerea_g32793.t1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
juglans_cinerea_g32794.t1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
juglans_cinerea_g33930.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
juglans_cinerea_g34208.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB
juglans_cinerea_g36956.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
juglans_cinerea_g37125.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
juglans_cinerea_g3753.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
juglans_cinerea_g3761.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
juglans_cinerea_g6335.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
juglans_cinerea_g670.t1 Alkaloid TRI/TRII low borderline TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB
juglans_cinerea_g7458.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH
juglans_cinerea_g7566.t1 Alkaloid TRI/TRII low borderline TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB
juglans_cinerea_g806.t1 Alkaloid TRI/TRII medium pass TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB