PlantSME Plant secondary metabolism enzyme database

Lagerstroemia indica (lagerstroemia_indica)

Imported from atlas release summary for Lagerstroemia indica.

1970
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.82% Alkaloid pathway 21.57% Phenylpropanoid pathway 19.95% Flavonoid pathway 13.5% Rosmarinic acid pathway 11.02% Steroid pathway 6.14%
Family Distribution
C4H 6.57% C3'H/CYP98A 6.42% BAHD 5.17% CYP76 4.47% T3O 4.22% IFS 4.22% UGT 3.95% 7DLGT 3.72%
Other Families 61.27%
More Families (96)
UFGT 179 3.72% POD 158 3.28% 4CL 153 3.18% DWF4/CYP90B1 124 2.58% F3H 115 2.39% BR6OX2/CYP85A2 97 2.02% F3'H/CYP75B 93 1.93% NMT 83 1.72% STR 82 1.7% CODM/T6ODM 77 1.6% CAD 70 1.45% LAC 66 1.37% HCT 65 1.35% SMT1/SMT2/SMT3 62 1.29% TRI/TRII 61 1.27% CAS 58 1.21% CSE 56 1.16% CYP71 55 1.14% H6H 52 1.08% COMT 51 1.06% PYKS 50 1.04% IFR 45 0.93% GES 43 0.89% GS 43 0.89% TPS 43 0.89% PMT 42 0.87% IO 41 0.85% 16OMT 36 0.75% RAS 36 0.75% TAT 36 0.75% G8O/G8H 33 0.69% SGD 32 0.66% CPD/CYP90A1 31 0.64% LAMT 30 0.62% CYP90D1 29 0.6% PAL 27 0.56% CHS 26 0.54% T16H 25 0.52% F3'5'H/CYP75A 25 0.52% BBE 24 0.5% ANR 24 0.5% CCR 24 0.5% BR6OX1/CYP85A1 24 0.5% 7DLH 23 0.48% F5H/CYP84A 23 0.48% FNS 22 0.46% COR 21 0.44% 8HGO 17 0.35% SLS 17 0.35% ANS/LDOX 17 0.35% CNMT 16 0.33% SQE 15 0.31% CYP51G1 15 0.31% NCS 14 0.29% DFR 14 0.29% MPO 13 0.27% ROT3/CYP90C1 13 0.27% HPPR 12 0.25% SMO1/SMO2 11 0.23% FPPS 10 0.21% CPR 9 0.19% SQS/FDFT1 9 0.19% CCoAOMT 8 0.17% AACT 8 0.17% GGPPS 8 0.17% CYP719 7 0.15% MVK 7 0.15% TDC 6 0.12% TYDC_DDC 6 0.12% DET2 6 0.12% IDI 6 0.12% HMGR 6 0.12% ISY 5 0.1% MVD 5 0.1% DXS 5 0.1% 6OMT_4OMT_SOMT 4 0.08% CHI 4 0.08% HMGS 4 0.08% PMK 4 0.08% HDR/IspH 4 0.08% ADC 3 0.06% FLS 3 0.06% DWF7 3 0.06% HYD1 3 0.06% MCT/IspD 3 0.06% CYP80B1 2 0.04% DWF1 2 0.04% DXR 2 0.04% XMT_MXMT_DXMT 1 0.02% CPI1 1 0.02% DWF5 1 0.02% FK 1 0.02% GPPS 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 548 19 BAHD (196) View species results
Alkaloid pathway 425 20 7DLGT (94) View species results
Phenylpropanoid pathway 393 11 POD (149) View species results
Flavonoid pathway 266 9 UFGT (172) View species results
Rosmarinic acid pathway 217 7 C4H (111) View species results
Steroid pathway 121 12 CAS (43) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1923 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 350 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status Best Target
lagerstroemia_indica_GWHPCAXI031078 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
lagerstroemia_indica_GWHPCAXI031637 Rosmarinic Acid 4CL low borderline 4CL__00008__sp_Q42982_4CL2_ORYSJ
lagerstroemia_indica_GWHPCAXI033105 Rosmarinic Acid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH