Lens culinaris (lens_culinaris)
/
Imported from atlas release summary for Lens culinaris.
1728
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1728
Candidate Genes
BAHD
5.85%
C3'H/CYP98A
5.57%
C4H
5.43%
4CL
5.0%
POD
4.23%
UGT
3.83%
T3O
3.59%
IFS
3.59%
Other Families
62.91%
More Families (97)
7DLGT
163
3.57%
UFGT
163
3.57%
CYP76
145
3.18%
F3H
126
2.76%
NMT
98
2.15%
F3'H/CYP75B
98
2.15%
DWF4/CYP90B1
94
2.06%
BR6OX2/CYP85A2
88
1.93%
CYP71
85
1.86%
CAS
83
1.82%
CODM/T6ODM
79
1.73%
STR
76
1.67%
H6H
70
1.53%
SMT1/SMT2/SMT3
70
1.53%
CAD
69
1.51%
SGD
68
1.49%
TRI/TRII
49
1.07%
LAC
49
1.07%
HCT
48
1.05%
TPS
44
0.96%
IFR
42
0.92%
COMT
42
0.92%
CSE
42
0.92%
PYKS
40
0.88%
RAS
39
0.85%
CYP90D1
38
0.83%
T16H
37
0.81%
7DLH
34
0.74%
GES
34
0.74%
ANR
34
0.74%
PAL
33
0.72%
CCR
33
0.72%
BBE
32
0.7%
GS
31
0.68%
PMT
28
0.61%
16OMT
25
0.55%
IO
24
0.53%
NCS
24
0.53%
F3'5'H/CYP75A
23
0.5%
COR
22
0.48%
DFR
21
0.46%
LAMT
20
0.44%
G8O/G8H
19
0.42%
AACT
19
0.42%
SLS
18
0.39%
F5H/CYP84A
18
0.39%
CYP51G1
18
0.39%
ROT3/CYP90C1
18
0.39%
8HGO
17
0.37%
CPD/CYP90A1
17
0.37%
FNS
15
0.33%
ANS/LDOX
15
0.33%
CHS
13
0.28%
TAT
12
0.26%
FPPS
12
0.26%
MPO
11
0.24%
CNMT
11
0.24%
CHI
10
0.22%
CPR
10
0.22%
BR6OX1/CYP85A1
10
0.22%
DXS
9
0.2%
CYP719
8
0.18%
HPPR
8
0.18%
HMGR
8
0.18%
TDC
7
0.15%
FLS
7
0.15%
CCoAOMT
7
0.15%
DET2
7
0.15%
SQS/FDFT1
6
0.13%
MVD
6
0.13%
CYP80B1
5
0.11%
DWF1
5
0.11%
CMK/IspE
5
0.11%
GGPPS
5
0.11%
SQE
4
0.09%
SMO1/SMO2
4
0.09%
MVK
4
0.09%
TYDC_DDC
3
0.07%
ADC
3
0.07%
ISY
3
0.07%
ODC
3
0.07%
XMT_MXMT_DXMT
3
0.07%
IDI
3
0.07%
GPPS
3
0.07%
HDR/IspH
3
0.07%
6OMT_4OMT_SOMT
2
0.04%
CPI1
2
0.04%
PMK
2
0.04%
DXR
2
0.04%
FK
1
0.02%
DWF7
1
0.02%
HYD1
1
0.02%
DWF5
1
0.02%
HDS/IspG
1
0.02%
MDS/IspF
1
0.02%
HMGS
1
0.02%
MCT/IspD
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 484 | 19 | BAHD (193) | View species results |
| Phenylpropanoid pathway | 379 | 11 | POD (161) | View species results |
| Alkaloid pathway | 373 | 21 | 7DLGT (70) | View species results |
| Flavonoid pathway | 252 | 11 | UFGT (158) | View species results |
| Rosmarinic acid pathway | 136 | 7 | C4H (50) | View species results |
| Steroid pathway | 104 | 13 | CAS (49) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1627 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 354 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| lens_culinaris_Lcu.2RBY.2g002930.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.2g003890.1 | Alkaloid | GES | medium | pass | GES__00010__sp_Q93YV0_GES_ARATH |
| lens_culinaris_Lcu.2RBY.2g023450.1 | Alkaloid | GES | low | borderline | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| lens_culinaris_Lcu.2RBY.2g072480.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| lens_culinaris_Lcu.2RBY.2g072510.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| lens_culinaris_Lcu.2RBY.2g072560.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| lens_culinaris_Lcu.2RBY.2g072640.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| lens_culinaris_Lcu.2RBY.2g072790.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| lens_culinaris_Lcu.2RBY.2g076860.1 | Alkaloid | GES | low | borderline | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| lens_culinaris_Lcu.2RBY.2g082110.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| lens_culinaris_Lcu.2RBY.2g087150.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.2g087230.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.3g000030.1 | Alkaloid | GES | low | borderline | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.3g000080.1 | Alkaloid | GES | low | borderline | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| lens_culinaris_Lcu.2RBY.3g000090.1 | Alkaloid | GES | low | borderline | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.3g000100.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| lens_culinaris_Lcu.2RBY.3g000380.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| lens_culinaris_Lcu.2RBY.3g000680.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| lens_culinaris_Lcu.2RBY.3g000870.1 | Alkaloid | GES | medium | pass | GES__00011__sp_R9QMR5_ATERP_PINBN |
| lens_culinaris_Lcu.2RBY.4g000830.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| lens_culinaris_Lcu.2RBY.4g019500.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| lens_culinaris_Lcu.2RBY.4g023170.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| lens_culinaris_Lcu.2RBY.4g049180.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| lens_culinaris_Lcu.2RBY.4g049210.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| lens_culinaris_Lcu.2RBY.4g058170.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.4g058200.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.4g058210.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.5g043130.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| lens_culinaris_Lcu.2RBY.5g043210.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| lens_culinaris_Lcu.2RBY.5g046650.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| lens_culinaris_Lcu.2RBY.6g002880.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| lens_culinaris_Lcu.2RBY.6g018480.1 | Alkaloid | GES | low | borderline | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| lens_culinaris_Lcu.2RBY.6g034370.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| lens_culinaris_Lcu.2RBY.6g052680.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |