PlantSME Plant secondary metabolism enzyme database

Leptochloa chinensis (leptochloa_chinensis)

Imported from atlas release summary for Leptochloa chinensis.

2670
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.18% Phenylpropanoid pathway 23.9% Alkaloid pathway 20.82% Flavonoid pathway 11.05% Rosmarinic acid pathway 9.78% Steroid pathway 5.28%
Family Distribution
C4H 6.6% BAHD 5.97% C3'H/CYP98A 5.85% POD 4.58% UGT 4.53% 7DLGT 4.17% 4CL 3.9% CYP76 3.67%
Other Families 60.73%
More Families (98)
IFS 238 3.36% T3O 223 3.15% DWF4/CYP90B1 193 2.73% UFGT 180 2.54% F3'H/CYP75B 177 2.5% NMT 152 2.15% F3H 148 2.09% BR6OX2/CYP85A2 141 1.99% STR 125 1.77% CYP71 120 1.69% SMT1/SMT2/SMT3 97 1.37% LAC 92 1.3% T16H 86 1.21% IFR 83 1.17% CODM/T6ODM 82 1.16% RAS 81 1.14% CAD 80 1.13% H6H 78 1.1% G8O/G8H 78 1.1% HCT 75 1.06% CCR 73 1.03% TRI/TRII 68 0.96% SLS 67 0.95% PMT 66 0.93% FNS 64 0.9% ANR 58 0.82% SGD 57 0.81% GS 56 0.79% CYP90D1 56 0.79% CAS 53 0.75% PAL 48 0.68% PYKS 47 0.66% F5H/CYP84A 46 0.65% COMT 46 0.65% NCS 45 0.64% CSE 44 0.62% TPS 44 0.62% DFR 42 0.59% COR 40 0.56% 16OMT 39 0.55% GES 38 0.54% IO 37 0.52% F3'5'H/CYP75A 32 0.45% BBE 29 0.41% 8HGO 29 0.41% CHS 29 0.41% CYP51G1 29 0.41% CPD/CYP90A1 27 0.38% 7DLH 26 0.37% TAT 26 0.37% FPPS 25 0.35% CYP80B1 21 0.3% CNMT 21 0.3% TDC 20 0.28% BR6OX1/CYP85A1 19 0.27% TYDC_DDC 16 0.23% ANS/LDOX 16 0.23% LAMT 15 0.21% GGPPS 15 0.21% CCoAOMT 14 0.2% CYP719 13 0.18% CPR 13 0.18% SQS/FDFT1 12 0.17% CHI 11 0.16% HPPR 11 0.16% SMO1/SMO2 10 0.14% DET2 10 0.14% AACT 9 0.13% MVK 9 0.13% MPO 8 0.11% ROT3/CYP90C1 8 0.11% MVD 8 0.11% XMT_MXMT_DXMT 7 0.1% ISY 7 0.1% 6OMT_4OMT_SOMT 7 0.1% DWF1 7 0.1% DXS 7 0.1% HMGR 6 0.08% MDS/IspF 5 0.07% MCT/IspD 5 0.07% HDS/IspG 5 0.07% FLS 4 0.06% FK 4 0.06% HYD1 4 0.06% HMGS 4 0.06% IDI 4 0.06% ADC 3 0.04% ODC 3 0.04% CYP80F1 3 0.04% DWF5 3 0.04% SQE 3 0.04% GPPS 3 0.04% DXR 3 0.04% CPI1 2 0.03% CMK/IspE 2 0.03% PMK 2 0.03% HDR/IspH 2 0.03% DWF7 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 779 19 BAHD (290) View species results
Phenylpropanoid pathway 638 12 POD (302) View species results
Alkaloid pathway 556 21 7DLGT (93) View species results
Flavonoid pathway 295 13 UFGT (135) View species results
Rosmarinic acid pathway 261 7 C4H (105) View species results
Steroid pathway 141 12 SMT1/SMT2/SMT3 (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2781 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 579 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
leptochloa_chinensis_GWHPBJVB004400 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
leptochloa_chinensis_GWHPBJVB004401 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
leptochloa_chinensis_GWHPBJVB006432 Alkaloid CYP719 medium borderline CYP719__00008__sp_L7T8H2_C719A_SINHE
leptochloa_chinensis_GWHPBJVB006542 Alkaloid CYP719 medium borderline CYP719__00008__sp_L7T8H2_C719A_SINHE
leptochloa_chinensis_GWHPBJVB047596 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
leptochloa_chinensis_GWHPBJVB047715 Alkaloid CYP719 medium borderline CYP719__00006__sp_I3QBP4_C7A21_PAPSO
leptochloa_chinensis_GWHPBJVB050094 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
leptochloa_chinensis_GWHPBJVB050204 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
leptochloa_chinensis_GWHPBJVB051797 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
leptochloa_chinensis_GWHPBJVB051798 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
leptochloa_chinensis_GWHPBJVB051799 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
leptochloa_chinensis_GWHPBJVB052831 Alkaloid CYP719 medium borderline CYP719__00005__sp_B5UAQ8_C7195_ESCCA
leptochloa_chinensis_GWHPBJVB053994 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE