PlantSME Plant secondary metabolism enzyme database

Luffa cylindrica (luffa_cylindrica)

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Imported from atlas release summary for Luffa cylindrica.

1352
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.77% Phenylpropanoid pathway 20.71% Alkaloid pathway 18.93% Flavonoid pathway 15.16% Rosmarinic acid pathway 10.36% Steroid pathway 6.07%
Family Distribution
C4H 6.77% C3'H/CYP98A 6.34% BAHD 5.45% CYP76 4.59% IFS 4.1% UGT 3.93% 7DLGT 3.76% UFGT 3.73%
Other Families 61.33%
More Families (96)
4CL 126 3.61% T3O 121 3.47% POD 114 3.27% DWF4/CYP90B1 84 2.41% F3H 81 2.32% PAL 66 1.89% F3'H/CYP75B 64 1.84% BR6OX2/CYP85A2 64 1.84% NMT 59 1.69% STR 54 1.55% CAD 53 1.52% CAS 50 1.43% TPS 48 1.38% CODM/T6ODM 46 1.32% SMT1/SMT2/SMT3 45 1.29% GES 44 1.26% H6H 42 1.2% TRI/TRII 37 1.06% BBE 37 1.06% CSE 36 1.03% IFR 35 1.0% LAC 35 1.0% IO 33 0.95% SLS 30 0.86% HCT 30 0.86% CYP71 30 0.86% SGD 27 0.77% F3'5'H/CYP75A 26 0.75% CYP90D1 26 0.75% GS 25 0.72% TAT 25 0.72% G8O/G8H 24 0.69% PYKS 24 0.69% T16H 22 0.63% COMT 22 0.63% FNS 21 0.6% BR6OX1/CYP85A1 21 0.6% CYP51G1 21 0.6% NCS 19 0.55% CCR 19 0.55% 16OMT 18 0.52% ANR 18 0.52% CPD/CYP90A1 18 0.52% PMT 16 0.46% LAMT 16 0.46% F5H/CYP84A 16 0.46% RAS 16 0.46% 8HGO 11 0.32% CNMT 10 0.29% 7DLH 10 0.29% CYP80B1 10 0.29% CYP719 10 0.29% DFR 10 0.29% GGPPS 10 0.29% MPO 9 0.26% CHS 9 0.26% ROT3/CYP90C1 9 0.26% DXS 9 0.26% ANS/LDOX 8 0.23% CPR 8 0.23% AACT 8 0.23% COR 7 0.2% CCoAOMT 7 0.2% SQE 7 0.2% HPPR 6 0.17% SQS/FDFT1 6 0.17% FPPS 6 0.17% TYDC_DDC 5 0.14% DET2 5 0.14% HMGR 5 0.14% MVK 5 0.14% CHI 4 0.11% PMK 4 0.11% ODC 3 0.09% ISY 2 0.06% XMT_MXMT_DXMT 2 0.06% CYP80F1 2 0.06% SMO1/SMO2 2 0.06% DWF1 2 0.06% CPI1 2 0.06% FK 2 0.06% HDR/IspH 2 0.06% IDI 2 0.06% MVD 2 0.06% MCT/IspD 2 0.06% ADC 1 0.03% FLS 1 0.03% DWF5 1 0.03% HYD1 1 0.03% DWF7 1 0.03% GPPS 1 0.03% HMGS 1 0.03% CMK/IspE 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 389 21 BAHD (134) View species results
Phenylpropanoid pathway 280 11 POD (105) View species results
Alkaloid pathway 256 20 7DLGT (50) View species results
Flavonoid pathway 205 9 UFGT (117) View species results
Rosmarinic acid pathway 140 7 C4H (64) View species results
Steroid pathway 82 11 CAS (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1401 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 236 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
luffa_cylindrica_Maker00033137 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
luffa_cylindrica_Maker00034831 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
luffa_cylindrica_Maker00035506 Alkaloid NMT medium pass NMT__00056__sp_Q9FNE9_ATXR6_ARATH
luffa_cylindrica_Maker00036410 Alkaloid NMT medium borderline NMT__00050__sp_Q944H0_PEAM2_ARATH
luffa_cylindrica_Maker00036863 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
luffa_cylindrica_Maker00038587 Alkaloid NMT medium pass NMT__00061__sp_Q9SAH5_PLMT_ARATH
luffa_cylindrica_Maker00038852 Alkaloid NMT low borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
luffa_cylindrica_Maker00040020 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
luffa_cylindrica_Maker00040053 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH