PlantSME Plant secondary metabolism enzyme database

Luffa cylindrica (luffa_cylindrica)

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Imported from atlas release summary for Luffa cylindrica.

1352
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.77% Phenylpropanoid pathway 20.71% Alkaloid pathway 18.93% Flavonoid pathway 15.16% Rosmarinic acid pathway 10.36% Steroid pathway 6.07%
Family Distribution
C4H 6.77% C3'H/CYP98A 6.34% BAHD 5.45% CYP76 4.59% IFS 4.1% UGT 3.93% 7DLGT 3.76% UFGT 3.73%
Other Families 61.33%
More Families (96)
4CL 126 3.61% T3O 121 3.47% POD 114 3.27% DWF4/CYP90B1 84 2.41% F3H 81 2.32% PAL 66 1.89% F3'H/CYP75B 64 1.84% BR6OX2/CYP85A2 64 1.84% NMT 59 1.69% STR 54 1.55% CAD 53 1.52% CAS 50 1.43% TPS 48 1.38% CODM/T6ODM 46 1.32% SMT1/SMT2/SMT3 45 1.29% GES 44 1.26% H6H 42 1.2% TRI/TRII 37 1.06% BBE 37 1.06% CSE 36 1.03% IFR 35 1.0% LAC 35 1.0% IO 33 0.95% SLS 30 0.86% HCT 30 0.86% CYP71 30 0.86% SGD 27 0.77% F3'5'H/CYP75A 26 0.75% CYP90D1 26 0.75% GS 25 0.72% TAT 25 0.72% G8O/G8H 24 0.69% PYKS 24 0.69% T16H 22 0.63% COMT 22 0.63% FNS 21 0.6% BR6OX1/CYP85A1 21 0.6% CYP51G1 21 0.6% NCS 19 0.55% CCR 19 0.55% 16OMT 18 0.52% ANR 18 0.52% CPD/CYP90A1 18 0.52% PMT 16 0.46% LAMT 16 0.46% F5H/CYP84A 16 0.46% RAS 16 0.46% 8HGO 11 0.32% CNMT 10 0.29% 7DLH 10 0.29% CYP80B1 10 0.29% CYP719 10 0.29% DFR 10 0.29% GGPPS 10 0.29% MPO 9 0.26% CHS 9 0.26% ROT3/CYP90C1 9 0.26% DXS 9 0.26% ANS/LDOX 8 0.23% CPR 8 0.23% AACT 8 0.23% COR 7 0.2% CCoAOMT 7 0.2% SQE 7 0.2% HPPR 6 0.17% SQS/FDFT1 6 0.17% FPPS 6 0.17% TYDC_DDC 5 0.14% DET2 5 0.14% HMGR 5 0.14% MVK 5 0.14% CHI 4 0.11% PMK 4 0.11% ODC 3 0.09% ISY 2 0.06% XMT_MXMT_DXMT 2 0.06% CYP80F1 2 0.06% SMO1/SMO2 2 0.06% DWF1 2 0.06% CPI1 2 0.06% FK 2 0.06% HDR/IspH 2 0.06% IDI 2 0.06% MVD 2 0.06% MCT/IspD 2 0.06% ADC 1 0.03% FLS 1 0.03% DWF5 1 0.03% HYD1 1 0.03% DWF7 1 0.03% GPPS 1 0.03% HMGS 1 0.03% CMK/IspE 1 0.03% DXR 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 389 21 BAHD (134) View species results
Phenylpropanoid pathway 280 11 POD (105) View species results
Alkaloid pathway 256 20 7DLGT (50) View species results
Flavonoid pathway 205 9 UFGT (117) View species results
Rosmarinic acid pathway 140 7 C4H (64) View species results
Steroid pathway 82 11 CAS (39) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1401 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 236 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
luffa_cylindrica_Maker00001464 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00001799 Alkaloid PYKS high pass
luffa_cylindrica_Maker00002704 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00005943 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00006294 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00008439 Alkaloid PYKS high pass
luffa_cylindrica_Maker00008463 Alkaloid PYKS high pass
luffa_cylindrica_Maker00008481 Alkaloid PYKS high pass
luffa_cylindrica_Maker00008699 Alkaloid PYKS high pass
luffa_cylindrica_Maker00008723 Alkaloid PYKS high pass
luffa_cylindrica_Maker00009695 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00009815 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00009855 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00014795 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00015145 Alkaloid PYKS high pass
luffa_cylindrica_Maker00016744 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00021823 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00023312 Alkaloid PYKS high pass
luffa_cylindrica_Maker00027563 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00031527 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00031554 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00031981 Alkaloid PYKS medium pass
luffa_cylindrica_Maker00033747 Alkaloid PYKS low borderline
luffa_cylindrica_Maker00038213 Alkaloid PYKS low borderline