PlantSME Plant secondary metabolism enzyme database

Malus baccata (malus_baccata)

Imported from atlas release summary for Malus baccata.

2548
Candidate Protein Records
2200
Pathway-Level Records
5174
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.23% Alkaloid pathway 22.5% Phenylpropanoid pathway 20.59% Flavonoid pathway 13.32% Rosmarinic acid pathway 8.82% Steroid pathway 5.55%
Family Distribution
C4H 5.95% BAHD 5.62% C3'H/CYP98A 5.55% UGT 4.91% 7DLGT 4.08% UFGT 3.9% IFS 3.75% POD 3.73%
Other Families 62.5%
More Families (96)
4CL 189 3.65% CYP76 189 3.65% T3O 153 2.96% F3H 153 2.96% DWF4/CYP90B1 124 2.4% NMT 117 2.26% H6H 105 2.03% CAD 98 1.89% BR6OX2/CYP85A2 90 1.74% F3'H/CYP75B 85 1.64% STR 82 1.58% CODM/T6ODM 72 1.39% CAS 66 1.28% GS 65 1.26% LAC 65 1.26% TRI/TRII 61 1.18% CYP71 52 1.01% IFR 50 0.97% CSE 49 0.95% TPS 48 0.93% SGD 47 0.91% TAT 47 0.91% HCT 46 0.89% ANR 45 0.87% COMT 45 0.87% GES 44 0.85% SMT1/SMT2/SMT3 44 0.85% IO 43 0.83% PMT 41 0.79% 7DLH 41 0.79% PYKS 40 0.77% CYP90D1 39 0.75% F3'5'H/CYP75A 37 0.72% T16H 36 0.7% BR6OX1/CYP85A1 36 0.7% RAS 34 0.66% F5H/CYP84A 33 0.64% BBE 32 0.62% SLS 32 0.62% CCR 31 0.6% LAMT 30 0.58% PAL 30 0.58% COR 28 0.54% NCS 25 0.48% G8O/G8H 25 0.48% 8HGO 23 0.44% FNS 22 0.43% 16OMT 20 0.39% CYP51G1 20 0.39% SQE 17 0.33% DFR 15 0.29% CHS 15 0.29% ANS/LDOX 14 0.27% CYP719 13 0.25% CNMT 13 0.25% MPO 13 0.25% CPD/CYP90A1 13 0.25% FPPS 12 0.23% CPR 11 0.21% SQS/FDFT1 11 0.21% ROT3/CYP90C1 11 0.21% ISY 9 0.17% CCoAOMT 9 0.17% MVD 8 0.15% HPPR 7 0.14% DXS 7 0.14% HMGR 7 0.14% AACT 7 0.14% CYP80B1 6 0.12% TDC 5 0.1% DET2 5 0.1% CPI1 5 0.1% GGPPS 5 0.1% MCT/IspD 5 0.1% XMT_MXMT_DXMT 4 0.08% ADC 4 0.08% TYDC_DDC 4 0.08% CHI 4 0.08% SMO1/SMO2 4 0.08% PMK 4 0.08% 6OMT_4OMT_SOMT 3 0.06% FLS 3 0.06% HYD1 3 0.06% DWF1 3 0.06% HMGS 3 0.06% MVK 3 0.06% HDR/IspH 3 0.06% HDS/IspG 3 0.06% FK 2 0.04% DWF5 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% DXR 2 0.04% IDI 2 0.04% CYP80F1 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 643 19 UGT (244) View species results
Alkaloid pathway 495 20 7DLGT (114) View species results
Phenylpropanoid pathway 453 12 POD (180) View species results
Flavonoid pathway 293 13 UFGT (187) View species results
Rosmarinic acid pathway 194 7 C4H (78) View species results
Steroid pathway 122 12 CAS (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1868 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Protein/Isoform Record Pathway Family Confidence Status Best Target
genome_MABA043915 Flavonoid F3H medium borderline F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
genome_MABA044288 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ
genome_MABA044943 Flavonoid F3H medium pass F3H__00007__sp_Q8W2X5_FL3H2_ORYSJ