PlantSME Plant secondary metabolism enzyme database

Malus baccata (malus_baccata)

Imported from atlas release summary for Malus baccata.

2200
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.23% Alkaloid pathway 22.5% Phenylpropanoid pathway 20.59% Flavonoid pathway 13.32% Rosmarinic acid pathway 8.82% Steroid pathway 5.55%
Family Distribution
C4H 5.95% BAHD 5.62% C3'H/CYP98A 5.55% UGT 4.91% 7DLGT 4.08% UFGT 3.9% IFS 3.75% POD 3.73%
Other Families 62.5%
More Families (96)
4CL 189 3.65% CYP76 189 3.65% T3O 153 2.96% F3H 153 2.96% DWF4/CYP90B1 124 2.4% NMT 117 2.26% H6H 105 2.03% CAD 98 1.89% BR6OX2/CYP85A2 90 1.74% F3'H/CYP75B 85 1.64% STR 82 1.58% CODM/T6ODM 72 1.39% CAS 66 1.28% GS 65 1.26% LAC 65 1.26% TRI/TRII 61 1.18% CYP71 52 1.01% IFR 50 0.97% CSE 49 0.95% TPS 48 0.93% SGD 47 0.91% TAT 47 0.91% HCT 46 0.89% ANR 45 0.87% COMT 45 0.87% GES 44 0.85% SMT1/SMT2/SMT3 44 0.85% IO 43 0.83% PMT 41 0.79% 7DLH 41 0.79% PYKS 40 0.77% CYP90D1 39 0.75% F3'5'H/CYP75A 37 0.72% T16H 36 0.7% BR6OX1/CYP85A1 36 0.7% RAS 34 0.66% F5H/CYP84A 33 0.64% BBE 32 0.62% SLS 32 0.62% CCR 31 0.6% LAMT 30 0.58% PAL 30 0.58% COR 28 0.54% NCS 25 0.48% G8O/G8H 25 0.48% 8HGO 23 0.44% FNS 22 0.43% 16OMT 20 0.39% CYP51G1 20 0.39% SQE 17 0.33% DFR 15 0.29% CHS 15 0.29% ANS/LDOX 14 0.27% CYP719 13 0.25% CNMT 13 0.25% MPO 13 0.25% CPD/CYP90A1 13 0.25% FPPS 12 0.23% CPR 11 0.21% SQS/FDFT1 11 0.21% ROT3/CYP90C1 11 0.21% ISY 9 0.17% CCoAOMT 9 0.17% MVD 8 0.15% HPPR 7 0.14% DXS 7 0.14% HMGR 7 0.14% AACT 7 0.14% CYP80B1 6 0.12% TDC 5 0.1% DET2 5 0.1% CPI1 5 0.1% GGPPS 5 0.1% MCT/IspD 5 0.1% XMT_MXMT_DXMT 4 0.08% ADC 4 0.08% TYDC_DDC 4 0.08% CHI 4 0.08% SMO1/SMO2 4 0.08% PMK 4 0.08% 6OMT_4OMT_SOMT 3 0.06% FLS 3 0.06% HYD1 3 0.06% DWF1 3 0.06% HMGS 3 0.06% MVK 3 0.06% HDR/IspH 3 0.06% HDS/IspG 3 0.06% FK 2 0.04% DWF5 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% DXR 2 0.04% IDI 2 0.04% CYP80F1 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 643 19 UGT (244) View species results
Alkaloid pathway 495 20 7DLGT (114) View species results
Phenylpropanoid pathway 453 12 POD (180) View species results
Flavonoid pathway 293 13 UFGT (187) View species results
Rosmarinic acid pathway 194 7 C4H (78) View species results
Steroid pathway 122 12 CAS (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1868 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
genome_MABA008238 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
genome_MABA008986 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
genome_MABA010201 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
genome_MABA017584 Terpenoid FPPS medium borderline FPPS__00005__sp_P34802_GGPP1_ARATH
genome_MABA017693 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
genome_MABA022273 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
genome_MABA022805 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
genome_MABA022806 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
genome_MABA028611 Terpenoid FPPS low borderline FPPS__00002__sp_K7W9N9_CPT6_SOLLC
genome_MABA037406 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
genome_MABA037410 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
genome_MABA045062 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC