PlantSME Plant secondary metabolism enzyme database

Malus baccata (malus_baccata)

Imported from atlas release summary for Malus baccata.

2200
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.23% Alkaloid pathway 22.5% Phenylpropanoid pathway 20.59% Flavonoid pathway 13.32% Rosmarinic acid pathway 8.82% Steroid pathway 5.55%
Family Distribution
C4H 5.95% BAHD 5.62% C3'H/CYP98A 5.55% UGT 4.91% 7DLGT 4.08% UFGT 3.9% IFS 3.75% POD 3.73%
Other Families 62.5%
More Families (96)
4CL 189 3.65% CYP76 189 3.65% T3O 153 2.96% F3H 153 2.96% DWF4/CYP90B1 124 2.4% NMT 117 2.26% H6H 105 2.03% CAD 98 1.89% BR6OX2/CYP85A2 90 1.74% F3'H/CYP75B 85 1.64% STR 82 1.58% CODM/T6ODM 72 1.39% CAS 66 1.28% GS 65 1.26% LAC 65 1.26% TRI/TRII 61 1.18% CYP71 52 1.01% IFR 50 0.97% CSE 49 0.95% TPS 48 0.93% SGD 47 0.91% TAT 47 0.91% HCT 46 0.89% ANR 45 0.87% COMT 45 0.87% GES 44 0.85% SMT1/SMT2/SMT3 44 0.85% IO 43 0.83% PMT 41 0.79% 7DLH 41 0.79% PYKS 40 0.77% CYP90D1 39 0.75% F3'5'H/CYP75A 37 0.72% T16H 36 0.7% BR6OX1/CYP85A1 36 0.7% RAS 34 0.66% F5H/CYP84A 33 0.64% BBE 32 0.62% SLS 32 0.62% CCR 31 0.6% LAMT 30 0.58% PAL 30 0.58% COR 28 0.54% NCS 25 0.48% G8O/G8H 25 0.48% 8HGO 23 0.44% FNS 22 0.43% 16OMT 20 0.39% CYP51G1 20 0.39% SQE 17 0.33% DFR 15 0.29% CHS 15 0.29% ANS/LDOX 14 0.27% CYP719 13 0.25% CNMT 13 0.25% MPO 13 0.25% CPD/CYP90A1 13 0.25% FPPS 12 0.23% CPR 11 0.21% SQS/FDFT1 11 0.21% ROT3/CYP90C1 11 0.21% ISY 9 0.17% CCoAOMT 9 0.17% MVD 8 0.15% HPPR 7 0.14% DXS 7 0.14% HMGR 7 0.14% AACT 7 0.14% CYP80B1 6 0.12% TDC 5 0.1% DET2 5 0.1% CPI1 5 0.1% GGPPS 5 0.1% MCT/IspD 5 0.1% XMT_MXMT_DXMT 4 0.08% ADC 4 0.08% TYDC_DDC 4 0.08% CHI 4 0.08% SMO1/SMO2 4 0.08% PMK 4 0.08% 6OMT_4OMT_SOMT 3 0.06% FLS 3 0.06% HYD1 3 0.06% DWF1 3 0.06% HMGS 3 0.06% MVK 3 0.06% HDR/IspH 3 0.06% HDS/IspG 3 0.06% FK 2 0.04% DWF5 2 0.04% DWF7 2 0.04% MDS/IspF 2 0.04% DXR 2 0.04% IDI 2 0.04% CYP80F1 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 643 19 UGT (244) View species results
Alkaloid pathway 495 20 7DLGT (114) View species results
Phenylpropanoid pathway 453 12 POD (180) View species results
Flavonoid pathway 293 13 UFGT (187) View species results
Rosmarinic acid pathway 194 7 C4H (78) View species results
Steroid pathway 122 12 CAS (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1868 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 371 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
genome_MABA019885 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
genome_MABA019898 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
genome_MABA020639 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
genome_MABA021775 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
genome_MABA021981 Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
genome_MABA022848 Alkaloid NMT low borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
genome_MABA023285 Alkaloid NMT low borderline NMT__00046__sp_Q8VZ17_SUVH6_ARATH
genome_MABA023752 Alkaloid NMT medium borderline NMT__00057__sp_Q9FR44_PEAM1_ARATH
genome_MABA024013 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
genome_MABA024246 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
genome_MABA024267 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
genome_MABA024269 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
genome_MABA024292 Alkaloid NMT medium pass NMT__00032__sp_Q5PP37_ATXR2_ARATH
genome_MABA024307 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
genome_MABA024311 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
genome_MABA024567 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
genome_MABA026898 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
genome_MABA026963 Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH
genome_MABA027125 Alkaloid NMT medium pass NMT__00030__sp_Q43088_RBCMT_PEA
genome_MABA028149 Alkaloid NMT low borderline NMT__00042__sp_Q8GZB6_SUVH4_ARATH
genome_MABA029701 Alkaloid NMT medium pass NMT__00025__sp_P93831_CLF_ARATH
genome_MABA030204 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
genome_MABA030341 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
genome_MABA030398 Alkaloid NMT medium pass NMT__00054__sp_Q9FF80_SUVH1_ARATH
genome_MABA030475 Alkaloid NMT medium borderline NMT__00018__sp_I1M2U5_NAMT1_SOYBN
genome_MABA030535 Alkaloid NMT medium pass NMT__00017__sp_F4K1J4_ATXR7_ARATH
genome_MABA030539 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
genome_MABA030734 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
genome_MABA030763 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
genome_MABA032231 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
genome_MABA032790 Alkaloid NMT low borderline NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
genome_MABA033652 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
genome_MABA033654 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH
genome_MABA034251 Alkaloid NMT low borderline NMT__00066__sp_Q9SU94_ANM11_ARATH
genome_MABA034528 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
genome_MABA034695 Alkaloid NMT medium borderline NMT__00038__sp_Q84PP7_MXMT2_COFAR
genome_MABA034831 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
genome_MABA034865 Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
genome_MABA034980 Alkaloid NMT medium pass NMT__00066__sp_Q9SU94_ANM11_ARATH
genome_MABA034987 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
genome_MABA035661 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
genome_MABA036634 Alkaloid NMT medium pass NMT__00042__sp_Q8GZB6_SUVH4_ARATH
genome_MABA037423 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH
genome_MABA038011 Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
genome_MABA038660 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
genome_MABA038987 Alkaloid NMT medium pass NMT__00028__sp_Q2LAE1_ASHH2_ARATH
genome_MABA039903 Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
genome_MABA040534 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
genome_MABA041005 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
genome_MABA041446 Alkaloid NMT medium pass NMT__00016__sp_F4JNX3_CMKMT_ARATH