Malus domestica (malus_domestica)
Imported from atlas release summary for Malus domestica.
2614
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2614
Candidate Genes
C4H
5.73%
C3'H/CYP98A
5.7%
BAHD
5.29%
UGT
4.74%
7DLGT
4.12%
IFS
3.8%
UFGT
3.8%
POD
3.72%
Other Families
63.12%
More Families (98)
CYP76
226
3.67%
F3H
193
3.13%
T3O
183
2.97%
4CL
177
2.87%
DWF4/CYP90B1
153
2.48%
CAD
142
2.3%
NMT
130
2.11%
H6H
124
2.01%
BR6OX2/CYP85A2
101
1.64%
F3'H/CYP75B
93
1.51%
CODM/T6ODM
91
1.48%
STR
89
1.44%
CAS
89
1.44%
GS
88
1.43%
SGD
82
1.33%
CYP71
79
1.28%
LAC
74
1.2%
COMT
68
1.1%
HCT
67
1.09%
CSE
66
1.07%
TRI/TRII
65
1.05%
TPS
55
0.89%
IFR
54
0.88%
PMT
53
0.86%
SMT1/SMT2/SMT3
53
0.86%
ANR
52
0.84%
7DLH
51
0.83%
TAT
51
0.83%
RAS
51
0.83%
IO
49
0.8%
PYKS
48
0.78%
G8O/G8H
47
0.76%
GES
47
0.76%
CYP90D1
47
0.76%
LAMT
42
0.68%
F3'5'H/CYP75A
40
0.65%
T16H
39
0.63%
FNS
39
0.63%
16OMT
37
0.6%
SLS
36
0.58%
BBE
34
0.55%
NCS
33
0.54%
F5H/CYP84A
33
0.54%
CCR
33
0.54%
BR6OX1/CYP85A1
31
0.5%
COR
27
0.44%
DFR
26
0.42%
8HGO
23
0.37%
SQE
23
0.37%
PAL
21
0.34%
CYP51G1
21
0.34%
CHS
17
0.28%
ANS/LDOX
16
0.26%
CPD/CYP90A1
16
0.26%
CYP719
13
0.21%
CYP80B1
12
0.19%
CNMT
12
0.19%
MPO
12
0.19%
ISY
12
0.19%
CCoAOMT
12
0.19%
ROT3/CYP90C1
12
0.19%
AACT
12
0.19%
CHI
11
0.18%
HMGR
11
0.18%
FPPS
11
0.18%
CPR
10
0.16%
SQS/FDFT1
10
0.16%
GGPPS
9
0.15%
TYDC_DDC
6
0.1%
HPPR
6
0.1%
DET2
6
0.1%
SMO1/SMO2
6
0.1%
DXS
6
0.1%
MVD
6
0.1%
6OMT_4OMT_SOMT
5
0.08%
MCT/IspD
5
0.08%
MDS/IspF
5
0.08%
TDC
4
0.06%
XMT_MXMT_DXMT
4
0.06%
FLS
4
0.06%
HYD1
4
0.06%
HDS/IspG
3
0.05%
HMGS
3
0.05%
MVK
3
0.05%
DXR
3
0.05%
PMK
3
0.05%
ODC
2
0.03%
ADC
2
0.03%
CYP80F1
2
0.03%
CPI1
2
0.03%
DWF5
2
0.03%
DWF7
2
0.03%
FK
2
0.03%
DWF1
2
0.03%
CMK/IspE
2
0.03%
IDI
2
0.03%
HDR/IspH
2
0.03%
GPPS
2
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 757 | 19 | BAHD (275) | View species results |
| Alkaloid pathway | 617 | 24 | 7DLGT (136) | View species results |
| Phenylpropanoid pathway | 549 | 13 | POD (217) | View species results |
| Flavonoid pathway | 328 | 12 | UFGT (213) | View species results |
| Rosmarinic acid pathway | 213 | 7 | C4H (80) | View species results |
| Steroid pathway | 150 | 14 | CAS (72) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2222 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 444 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Mdom15G0021260.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom15G0021290.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom15G0030770.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mdom16G0010250.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mdom16G0010260.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mdom16G0010880.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Mdom16G0010890.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Mdom16G0014100.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom16G0016830.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Mdom17G0000320.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Mdom17G0010590.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mdom17G0015110.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mdom17G0015120.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mdom17G0016550.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Mdom17G0019730.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |
| Mdom17G0023570.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom17G0023640.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom17G0024850.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom00G0002620.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Mdom00G0002630.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Mdom01G0020100.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Mdom02G0010910.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom02G0020960.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mdom02G0024190.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Mdom03G0023710.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Mdom04G0001780.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Mdom04G0001800.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Mdom05G0002150.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom05G0005840.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Mdom05G0007970.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Mdom06G0006470.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Mdom06G0008680.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mdom06G0012200.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mdom06G0012220.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mdom07G0006480.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mdom07G0027180.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Mdom08G0000310.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mdom08G0013920.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mdom09G0000040.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Mdom09G0011610.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mdom09G0024240.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom09G0024480.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom09G0024490.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Mdom09G0024750.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Mdom10G0007290.1 | Rosmarinic Acid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Mdom11G0012670.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Mdom12G0004540.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Mdom12G0004550.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Mdom13G0010400.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Mdom13G0010990.1 | Rosmarinic Acid | 4CL | medium | pass | 4CL__00004__sp_O24146_4CL2_TOBAC |