Malus domestica (malus_domestica)
Imported from atlas release summary for Malus domestica.
2614
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2614
Candidate Genes
C4H
5.73%
C3'H/CYP98A
5.7%
BAHD
5.29%
UGT
4.74%
7DLGT
4.12%
IFS
3.8%
UFGT
3.8%
POD
3.72%
Other Families
63.12%
More Families (98)
CYP76
226
3.67%
F3H
193
3.13%
T3O
183
2.97%
4CL
177
2.87%
DWF4/CYP90B1
153
2.48%
CAD
142
2.3%
NMT
130
2.11%
H6H
124
2.01%
BR6OX2/CYP85A2
101
1.64%
F3'H/CYP75B
93
1.51%
CODM/T6ODM
91
1.48%
STR
89
1.44%
CAS
89
1.44%
GS
88
1.43%
SGD
82
1.33%
CYP71
79
1.28%
LAC
74
1.2%
COMT
68
1.1%
HCT
67
1.09%
CSE
66
1.07%
TRI/TRII
65
1.05%
TPS
55
0.89%
IFR
54
0.88%
PMT
53
0.86%
SMT1/SMT2/SMT3
53
0.86%
ANR
52
0.84%
7DLH
51
0.83%
TAT
51
0.83%
RAS
51
0.83%
IO
49
0.8%
PYKS
48
0.78%
G8O/G8H
47
0.76%
GES
47
0.76%
CYP90D1
47
0.76%
LAMT
42
0.68%
F3'5'H/CYP75A
40
0.65%
T16H
39
0.63%
FNS
39
0.63%
16OMT
37
0.6%
SLS
36
0.58%
BBE
34
0.55%
NCS
33
0.54%
F5H/CYP84A
33
0.54%
CCR
33
0.54%
BR6OX1/CYP85A1
31
0.5%
COR
27
0.44%
DFR
26
0.42%
8HGO
23
0.37%
SQE
23
0.37%
PAL
21
0.34%
CYP51G1
21
0.34%
CHS
17
0.28%
ANS/LDOX
16
0.26%
CPD/CYP90A1
16
0.26%
CYP719
13
0.21%
CYP80B1
12
0.19%
CNMT
12
0.19%
MPO
12
0.19%
ISY
12
0.19%
CCoAOMT
12
0.19%
ROT3/CYP90C1
12
0.19%
AACT
12
0.19%
CHI
11
0.18%
HMGR
11
0.18%
FPPS
11
0.18%
CPR
10
0.16%
SQS/FDFT1
10
0.16%
GGPPS
9
0.15%
TYDC_DDC
6
0.1%
HPPR
6
0.1%
DET2
6
0.1%
SMO1/SMO2
6
0.1%
DXS
6
0.1%
MVD
6
0.1%
6OMT_4OMT_SOMT
5
0.08%
MCT/IspD
5
0.08%
MDS/IspF
5
0.08%
TDC
4
0.06%
XMT_MXMT_DXMT
4
0.06%
FLS
4
0.06%
HYD1
4
0.06%
HDS/IspG
3
0.05%
HMGS
3
0.05%
MVK
3
0.05%
DXR
3
0.05%
PMK
3
0.05%
ODC
2
0.03%
ADC
2
0.03%
CYP80F1
2
0.03%
CPI1
2
0.03%
DWF5
2
0.03%
DWF7
2
0.03%
FK
2
0.03%
DWF1
2
0.03%
CMK/IspE
2
0.03%
IDI
2
0.03%
HDR/IspH
2
0.03%
GPPS
2
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 757 | 19 | BAHD (275) | View species results |
| Alkaloid pathway | 617 | 24 | 7DLGT (136) | View species results |
| Phenylpropanoid pathway | 549 | 13 | POD (217) | View species results |
| Flavonoid pathway | 328 | 12 | UFGT (213) | View species results |
| Rosmarinic acid pathway | 213 | 7 | C4H (80) | View species results |
| Steroid pathway | 150 | 14 | CAS (72) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2222 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 444 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Mdom00G0002920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom00G0015120.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom00G0015960.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom01G0003070.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom01G0009440.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom01G0017750.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom02G0002990.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom02G0003690.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom02G0008540.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mdom02G0010880.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Mdom02G0021950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom03G0010580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom03G0011640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom03G0011660.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom03G0013400.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mdom03G0014470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom03G0014480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom03G0018820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom03G0020250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom04G0003680.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mdom04G0009420.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom04G0015420.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom04G0016350.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom05G0003520.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom05G0003560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom05G0015640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom05G0015650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom05G0015670.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom06G0019450.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom07G0016000.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom08G0000060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom08G0012220.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom08G0012260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom08G0017620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom08G0017630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom09G0004120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom09G0018200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom09G0018210.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom09G0018240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom09G0018250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom09G0018260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom09G0019300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom10G0001500.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom10G0004150.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom10G0004210.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom10G0014920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom11G0003270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom11G0006740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom11G0012260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mdom11G0013760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |