Malus domestica (malus_domestica)
Imported from atlas release summary for Malus domestica.
2997
Candidate Protein Records
2614
Pathway-Level Records
6163
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6163
Family-Level Calls
C4H
5.73%
C3'H/CYP98A
5.7%
BAHD
5.29%
UGT
4.74%
7DLGT
4.12%
IFS
3.8%
UFGT
3.8%
POD
3.72%
Other Families
63.12%
More Families (98)
CYP76
226
3.67%
F3H
193
3.13%
T3O
183
2.97%
4CL
177
2.87%
DWF4/CYP90B1
153
2.48%
CAD
142
2.3%
NMT
130
2.11%
H6H
124
2.01%
BR6OX2/CYP85A2
101
1.64%
F3'H/CYP75B
93
1.51%
CODM/T6ODM
91
1.48%
STR
89
1.44%
CAS
89
1.44%
GS
88
1.43%
SGD
82
1.33%
CYP71
79
1.28%
LAC
74
1.2%
COMT
68
1.1%
HCT
67
1.09%
CSE
66
1.07%
TRI/TRII
65
1.05%
TPS
55
0.89%
IFR
54
0.88%
PMT
53
0.86%
SMT1/SMT2/SMT3
53
0.86%
ANR
52
0.84%
7DLH
51
0.83%
TAT
51
0.83%
RAS
51
0.83%
IO
49
0.8%
PYKS
48
0.78%
G8O/G8H
47
0.76%
GES
47
0.76%
CYP90D1
47
0.76%
LAMT
42
0.68%
F3'5'H/CYP75A
40
0.65%
T16H
39
0.63%
FNS
39
0.63%
16OMT
37
0.6%
SLS
36
0.58%
BBE
34
0.55%
NCS
33
0.54%
F5H/CYP84A
33
0.54%
CCR
33
0.54%
BR6OX1/CYP85A1
31
0.5%
COR
27
0.44%
DFR
26
0.42%
8HGO
23
0.37%
SQE
23
0.37%
PAL
21
0.34%
CYP51G1
21
0.34%
CHS
17
0.28%
ANS/LDOX
16
0.26%
CPD/CYP90A1
16
0.26%
CYP719
13
0.21%
CYP80B1
12
0.19%
CNMT
12
0.19%
MPO
12
0.19%
ISY
12
0.19%
CCoAOMT
12
0.19%
ROT3/CYP90C1
12
0.19%
AACT
12
0.19%
CHI
11
0.18%
HMGR
11
0.18%
FPPS
11
0.18%
CPR
10
0.16%
SQS/FDFT1
10
0.16%
GGPPS
9
0.15%
TYDC_DDC
6
0.1%
HPPR
6
0.1%
DET2
6
0.1%
SMO1/SMO2
6
0.1%
DXS
6
0.1%
MVD
6
0.1%
6OMT_4OMT_SOMT
5
0.08%
MCT/IspD
5
0.08%
MDS/IspF
5
0.08%
TDC
4
0.06%
XMT_MXMT_DXMT
4
0.06%
FLS
4
0.06%
HYD1
4
0.06%
HDS/IspG
3
0.05%
HMGS
3
0.05%
MVK
3
0.05%
DXR
3
0.05%
PMK
3
0.05%
ODC
2
0.03%
ADC
2
0.03%
CYP80F1
2
0.03%
CPI1
2
0.03%
DWF5
2
0.03%
DWF7
2
0.03%
FK
2
0.03%
DWF1
2
0.03%
CMK/IspE
2
0.03%
IDI
2
0.03%
HDR/IspH
2
0.03%
GPPS
2
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 757 | 19 | BAHD (275) | View species results |
| Alkaloid pathway | 617 | 24 | 7DLGT (136) | View species results |
| Phenylpropanoid pathway | 549 | 13 | POD (217) | View species results |
| Flavonoid pathway | 328 | 12 | UFGT (213) | View species results |
| Rosmarinic acid pathway | 213 | 7 | C4H (80) | View species results |
| Steroid pathway | 150 | 14 | CAS (72) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2222 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 444 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Mdom11G0010300.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom11G0010310.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom11G0010320.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0010330.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom11G0014740.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0017110.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0017120.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0017140.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom11G0018700.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom11G0018710.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0018740.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0018760.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom11G0018770.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom11G0020470.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0023390.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom11G0023410.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom12G0007630.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom12G0008220.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom12G0008230.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom12G0008260.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0003080.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005240.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005250.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005310.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005320.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005330.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005340.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005360.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005380.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005400.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0005570.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0006380.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0009430.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0009460.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0009490.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0009560.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0010300.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom13G0010320.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0010330.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom13G0010570.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom13G0010610.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom13G0010630.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0010810.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0019550.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom13G0024010.1 | Rosmarinic Acid | C4H | low | borderline |
| Mdom14G0004080.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom14G0005530.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom14G0008110.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom14G0008120.1 | Rosmarinic Acid | C4H | medium | pass |
| Mdom14G0008350.1 | Rosmarinic Acid | C4H | low | borderline |