PlantSME Plant secondary metabolism enzyme database

Malus domestica (malus_domestica)

Imported from atlas release summary for Malus domestica.

2997
Candidate Protein Records
2614
Pathway-Level Records
6163
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 28.96% Alkaloid pathway 23.6% Phenylpropanoid pathway 21.0% Flavonoid pathway 12.55% Rosmarinic acid pathway 8.15% Steroid pathway 5.74%
Family Distribution
C4H 5.73% C3'H/CYP98A 5.7% BAHD 5.29% UGT 4.74% 7DLGT 4.12% IFS 3.8% UFGT 3.8% POD 3.72%
Other Families 63.12%
More Families (98)
CYP76 226 3.67% F3H 193 3.13% T3O 183 2.97% 4CL 177 2.87% DWF4/CYP90B1 153 2.48% CAD 142 2.3% NMT 130 2.11% H6H 124 2.01% BR6OX2/CYP85A2 101 1.64% F3'H/CYP75B 93 1.51% CODM/T6ODM 91 1.48% STR 89 1.44% CAS 89 1.44% GS 88 1.43% SGD 82 1.33% CYP71 79 1.28% LAC 74 1.2% COMT 68 1.1% HCT 67 1.09% CSE 66 1.07% TRI/TRII 65 1.05% TPS 55 0.89% IFR 54 0.88% PMT 53 0.86% SMT1/SMT2/SMT3 53 0.86% ANR 52 0.84% 7DLH 51 0.83% TAT 51 0.83% RAS 51 0.83% IO 49 0.8% PYKS 48 0.78% G8O/G8H 47 0.76% GES 47 0.76% CYP90D1 47 0.76% LAMT 42 0.68% F3'5'H/CYP75A 40 0.65% T16H 39 0.63% FNS 39 0.63% 16OMT 37 0.6% SLS 36 0.58% BBE 34 0.55% NCS 33 0.54% F5H/CYP84A 33 0.54% CCR 33 0.54% BR6OX1/CYP85A1 31 0.5% COR 27 0.44% DFR 26 0.42% 8HGO 23 0.37% SQE 23 0.37% PAL 21 0.34% CYP51G1 21 0.34% CHS 17 0.28% ANS/LDOX 16 0.26% CPD/CYP90A1 16 0.26% CYP719 13 0.21% CYP80B1 12 0.19% CNMT 12 0.19% MPO 12 0.19% ISY 12 0.19% CCoAOMT 12 0.19% ROT3/CYP90C1 12 0.19% AACT 12 0.19% CHI 11 0.18% HMGR 11 0.18% FPPS 11 0.18% CPR 10 0.16% SQS/FDFT1 10 0.16% GGPPS 9 0.15% TYDC_DDC 6 0.1% HPPR 6 0.1% DET2 6 0.1% SMO1/SMO2 6 0.1% DXS 6 0.1% MVD 6 0.1% 6OMT_4OMT_SOMT 5 0.08% MCT/IspD 5 0.08% MDS/IspF 5 0.08% TDC 4 0.06% XMT_MXMT_DXMT 4 0.06% FLS 4 0.06% HYD1 4 0.06% HDS/IspG 3 0.05% HMGS 3 0.05% MVK 3 0.05% DXR 3 0.05% PMK 3 0.05% ODC 2 0.03% ADC 2 0.03% CYP80F1 2 0.03% CPI1 2 0.03% DWF5 2 0.03% DWF7 2 0.03% FK 2 0.03% DWF1 2 0.03% CMK/IspE 2 0.03% IDI 2 0.03% HDR/IspH 2 0.03% GPPS 2 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 757 19 BAHD (275) View species results
Alkaloid pathway 617 24 7DLGT (136) View species results
Phenylpropanoid pathway 549 13 POD (217) View species results
Flavonoid pathway 328 12 UFGT (213) View species results
Rosmarinic acid pathway 213 7 C4H (80) View species results
Steroid pathway 150 14 CAS (72) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2222 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 444 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Mdom17G0007280.1 Terpenoid TPS medium pass TPS__00131__sp_J9QS23_TPS9_SELML
Mdom17G0008120.1 Terpenoid TPS medium pass TPS__00125__sp_I6RE61_TPS4_MATCR
Mdom17G0008130.1 Terpenoid TPS medium pass TPS__00062__sp_B9T536_TPS10_RICCO
Mdom17G0008160.1 Terpenoid TPS medium pass TPS__00112__sp_G0Y7D3_TPS3_LITCU
Mdom17G0008230.1 Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU