PlantSME Plant secondary metabolism enzyme database

Malus x domestica (malus_x_domestica)

Imported from atlas release summary for Malus x domestica.

2618
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.95% Alkaloid pathway 23.68% Phenylpropanoid pathway 20.97% Flavonoid pathway 12.57% Rosmarinic acid pathway 8.14% Steroid pathway 5.69%
Family Distribution
C4H 5.73% C3'H/CYP98A 5.7% BAHD 5.29% UGT 4.74% 7DLGT 4.12% IFS 3.8% UFGT 3.8% POD 3.72%
Other Families 63.12%
More Families (98)
CYP76 226 3.67% F3H 195 3.16% T3O 183 2.97% 4CL 177 2.87% DWF4/CYP90B1 153 2.48% CAD 142 2.3% NMT 130 2.11% H6H 125 2.03% BR6OX2/CYP85A2 101 1.64% F3'H/CYP75B 93 1.51% CODM/T6ODM 90 1.46% STR 89 1.44% CAS 89 1.44% GS 88 1.43% SGD 82 1.33% CYP71 79 1.28% LAC 74 1.2% COMT 68 1.1% HCT 67 1.09% CSE 66 1.07% TRI/TRII 65 1.05% TPS 55 0.89% IFR 54 0.88% PMT 53 0.86% SMT1/SMT2/SMT3 53 0.86% ANR 52 0.84% 7DLH 51 0.83% TAT 51 0.83% RAS 51 0.83% IO 49 0.8% PYKS 48 0.78% G8O/G8H 47 0.76% GES 47 0.76% CYP90D1 47 0.76% LAMT 42 0.68% F3'5'H/CYP75A 40 0.65% T16H 39 0.63% FNS 39 0.63% 16OMT 37 0.6% SLS 36 0.58% BBE 34 0.55% F5H/CYP84A 33 0.54% CCR 33 0.54% NCS 32 0.52% BR6OX1/CYP85A1 31 0.5% COR 27 0.44% DFR 26 0.42% 8HGO 23 0.37% SQE 23 0.37% PAL 21 0.34% CYP51G1 21 0.34% CHS 17 0.28% ANS/LDOX 16 0.26% CPD/CYP90A1 16 0.26% CYP719 13 0.21% CYP80B1 12 0.19% CNMT 12 0.19% MPO 12 0.19% ISY 12 0.19% CCoAOMT 12 0.19% ROT3/CYP90C1 12 0.19% AACT 12 0.19% CHI 11 0.18% HMGR 11 0.18% FPPS 11 0.18% CPR 10 0.16% SQS/FDFT1 10 0.16% GGPPS 9 0.15% TYDC_DDC 6 0.1% HPPR 6 0.1% DET2 6 0.1% SMO1/SMO2 6 0.1% DXS 6 0.1% MVD 6 0.1% 6OMT_4OMT_SOMT 5 0.08% MCT/IspD 5 0.08% MDS/IspF 5 0.08% TDC 4 0.06% XMT_MXMT_DXMT 4 0.06% HYD1 4 0.06% FLS 3 0.05% HDS/IspG 3 0.05% HMGS 3 0.05% MVK 3 0.05% DXR 3 0.05% PMK 3 0.05% ODC 2 0.03% ADC 2 0.03% CYP80F1 2 0.03% CPI1 2 0.03% DWF5 2 0.03% DWF7 2 0.03% FK 2 0.03% DWF1 2 0.03% CMK/IspE 2 0.03% IDI 2 0.03% HDR/IspH 2 0.03% GPPS 2 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 758 19 BAHD (275) View species results
Alkaloid pathway 620 24 7DLGT (137) View species results
Phenylpropanoid pathway 549 12 POD (217) View species results
Flavonoid pathway 329 12 UFGT (213) View species results
Rosmarinic acid pathway 213 7 C4H (80) View species results
Steroid pathway 149 13 CAS (72) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2222 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 444 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HMGR
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Gene Pathway Family Confidence Status Best Target
Mx00G0004730.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Mx02G0009870.1 Terpenoid HMGR medium pass HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
Mx02G0009880.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Mx04G0020000.1 Terpenoid HMGR medium pass HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
Mx05G0011860.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Mx08G0002170.1 Terpenoid HMGR medium pass HMGR__00001__sp_A0A0A1C3I2_HMGR1_PANGI
Mx10G0012150.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Mx10G0023010.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Mx13G0022780.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Mx15G0020710.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI
Mx16G0017780.1 Terpenoid HMGR medium pass HMGR__00002__sp_A0A0A1C930_HMR2A_PANGI