PlantSME Plant secondary metabolism enzyme database

Manihot esculenta (manihot_esculenta)

Imported from atlas release summary for Manihot esculenta.

3849
Candidate Protein Records
3128
Pathway-Level Records
7619
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 29.67% Alkaloid pathway 25.42% Phenylpropanoid pathway 19.76% Flavonoid pathway 9.43% Steroid pathway 7.93% Rosmarinic acid pathway 7.8%
Family Distribution
BAHD 6.75% C3'H/CYP98A 5.93% C4H 5.74% 4CL 4.29% IFS 4.15% NMT 4.13% POD 3.95% T3O 3.82%
Other Families 61.24%
More Families (96)
CYP76 259 3.4% UGT 215 2.82% DWF4/CYP90B1 214 2.81% UFGT 199 2.61% 7DLGT 196 2.57% F3H 179 2.35% CAD 171 2.24% F3'H/CYP75B 152 2.0% SMT1/SMT2/SMT3 137 1.8% CYP71 129 1.69% STR 128 1.68% SGD 122 1.6% CODM/T6ODM 108 1.42% CAS 101 1.33% TRI/TRII 100 1.31% CYP90D1 99 1.3% PMT 91 1.19% BR6OX2/CYP85A2 83 1.09% IFR 79 1.04% TPS 79 1.04% H6H 73 0.96% GES 73 0.96% RAS 70 0.92% ANR 67 0.88% GS 65 0.85% IO 59 0.77% HCT 58 0.76% COMT 57 0.75% CSE 55 0.72% LAC 55 0.72% 16OMT 54 0.71% SLS 54 0.71% 7DLH 49 0.64% FNS 47 0.62% PYKS 43 0.56% TAT 42 0.55% CYP51G1 41 0.54% T16H 40 0.53% LAMT 39 0.51% NCS 37 0.49% CNMT 36 0.47% CCR 35 0.46% SQE 34 0.45% 8HGO 33 0.43% COR 33 0.43% F5H/CYP84A 33 0.43% FPPS 33 0.43% ROT3/CYP90C1 30 0.39% BR6OX1/CYP85A1 26 0.34% CPD/CYP90A1 25 0.33% F3'5'H/CYP75A 23 0.3% CCoAOMT 23 0.3% ANS/LDOX 22 0.29% BBE 21 0.28% PAL 21 0.28% DFR 21 0.28% G8O/G8H 20 0.26% MVD 18 0.24% CHS 16 0.21% DXS 16 0.21% MPO 14 0.18% CPR 14 0.18% SQS/FDFT1 13 0.17% AACT 13 0.17% HPPR 11 0.14% MVK 11 0.14% TYDC_DDC 10 0.13% GGPPS 9 0.12% CHI 8 0.11% SMO1/SMO2 8 0.11% DWF7 8 0.11% DET2 8 0.11% MCT/IspD 8 0.11% ISY 7 0.09% CYP719 7 0.09% HMGR 7 0.09% ADC 6 0.08% PMK 6 0.08% HDR/IspH 6 0.08% CYP80B1 5 0.07% TDC 5 0.07% 6OMT_4OMT_SOMT 5 0.07% CPI1 4 0.05% DWF1 4 0.05% CMK/IspE 4 0.05% HDS/IspG 4 0.05% ODC 3 0.04% FK 3 0.04% IDI 3 0.04% XMT_MXMT_DXMT 2 0.03% FLS 2 0.03% HYD1 2 0.03% DWF5 2 0.03% HMGS 2 0.03% MDS/IspF 2 0.03% DXR 2 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 928 19 BAHD (426) View species results
Alkaloid pathway 795 23 NMT (170) View species results
Phenylpropanoid pathway 618 11 POD (289) View species results
Flavonoid pathway 295 9 UFGT (185) View species results
Steroid pathway 248 13 CAS (91) View species results
Rosmarinic acid pathway 244 7 C4H (111) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 2844 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 642 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP76
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Mesc18G0014120.1 Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
MescScaffold0300001510.1 Terpenoid CYP76 medium pass CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
MescScaffold0300001530.1 Terpenoid CYP76 medium borderline CYP76__00025__sp_W8JIS5_IO_CATRO
MescScaffold4550009250.1 Terpenoid CYP76 low borderline CYP76__00025__sp_W8JIS5_IO_CATRO
MescScaffold4550009260.1 Terpenoid CYP76 medium pass CYP76__00025__sp_W8JIS5_IO_CATRO
MescScaffold4550009280.1 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
MescScaffold4550009290.1 Terpenoid CYP76 low borderline CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
MescScaffold4660009350.1 Terpenoid CYP76 medium borderline CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
MescScaffold5810010680.1 Terpenoid CYP76 medium borderline CYP76__00022__sp_Q8VWZ7_C76B6_CATRO