PlantSME Plant secondary metabolism enzyme database

Manihot esculenta (manihot_esculenta)

Imported from atlas release summary for Manihot esculenta.

3128
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.67% Alkaloid pathway 25.42% Phenylpropanoid pathway 19.76% Flavonoid pathway 9.43% Steroid pathway 7.93% Rosmarinic acid pathway 7.8%
Family Distribution
BAHD 6.75% C3'H/CYP98A 5.93% C4H 5.74% 4CL 4.29% IFS 4.15% NMT 4.13% POD 3.95% T3O 3.82%
Other Families 61.24%
More Families (96)
CYP76 259 3.4% UGT 215 2.82% DWF4/CYP90B1 214 2.81% UFGT 199 2.61% 7DLGT 196 2.57% F3H 179 2.35% CAD 171 2.24% F3'H/CYP75B 152 2.0% SMT1/SMT2/SMT3 137 1.8% CYP71 129 1.69% STR 128 1.68% SGD 122 1.6% CODM/T6ODM 108 1.42% CAS 101 1.33% TRI/TRII 100 1.31% CYP90D1 99 1.3% PMT 91 1.19% BR6OX2/CYP85A2 83 1.09% IFR 79 1.04% TPS 79 1.04% H6H 73 0.96% GES 73 0.96% RAS 70 0.92% ANR 67 0.88% GS 65 0.85% IO 59 0.77% HCT 58 0.76% COMT 57 0.75% CSE 55 0.72% LAC 55 0.72% 16OMT 54 0.71% SLS 54 0.71% 7DLH 49 0.64% FNS 47 0.62% PYKS 43 0.56% TAT 42 0.55% CYP51G1 41 0.54% T16H 40 0.53% LAMT 39 0.51% NCS 37 0.49% CNMT 36 0.47% CCR 35 0.46% SQE 34 0.45% 8HGO 33 0.43% COR 33 0.43% F5H/CYP84A 33 0.43% FPPS 33 0.43% ROT3/CYP90C1 30 0.39% BR6OX1/CYP85A1 26 0.34% CPD/CYP90A1 25 0.33% F3'5'H/CYP75A 23 0.3% CCoAOMT 23 0.3% ANS/LDOX 22 0.29% BBE 21 0.28% PAL 21 0.28% DFR 21 0.28% G8O/G8H 20 0.26% MVD 18 0.24% CHS 16 0.21% DXS 16 0.21% MPO 14 0.18% CPR 14 0.18% SQS/FDFT1 13 0.17% AACT 13 0.17% HPPR 11 0.14% MVK 11 0.14% TYDC_DDC 10 0.13% GGPPS 9 0.12% CHI 8 0.11% SMO1/SMO2 8 0.11% DWF7 8 0.11% DET2 8 0.11% MCT/IspD 8 0.11% ISY 7 0.09% CYP719 7 0.09% HMGR 7 0.09% ADC 6 0.08% PMK 6 0.08% HDR/IspH 6 0.08% CYP80B1 5 0.07% TDC 5 0.07% 6OMT_4OMT_SOMT 5 0.07% CPI1 4 0.05% DWF1 4 0.05% CMK/IspE 4 0.05% HDS/IspG 4 0.05% ODC 3 0.04% FK 3 0.04% IDI 3 0.04% XMT_MXMT_DXMT 2 0.03% FLS 2 0.03% HYD1 2 0.03% DWF5 2 0.03% HMGS 2 0.03% MDS/IspF 2 0.03% DXR 2 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 928 19 BAHD (426) View species results
Alkaloid pathway 795 23 NMT (170) View species results
Phenylpropanoid pathway 618 11 POD (289) View species results
Flavonoid pathway 295 9 UFGT (185) View species results
Steroid pathway 248 13 CAS (91) View species results
Rosmarinic acid pathway 244 7 C4H (111) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2844 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 642 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
Mesc14G0004630.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Mesc14G0004630.2 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC
Mesc14G0015450.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Mesc17G0003490.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
Mesc18G0000670.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Mesc18G0002600.1 Phenylpropanoid HCT low borderline HCT__00002__sp_Q9FI78_HST_ARATH
Mesc18G0014930.1 Phenylpropanoid HCT low borderline HCT__00001__sp_Q8GSM7_HST_TOBAC
MescScaffold8580015750.1 Phenylpropanoid HCT medium pass HCT__00001__sp_Q8GSM7_HST_TOBAC