Manihot esculenta (manihot_esculenta)
Imported from atlas release summary for Manihot esculenta.
3128
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3128
Candidate Genes
BAHD
6.75%
C3'H/CYP98A
5.93%
C4H
5.74%
4CL
4.29%
IFS
4.15%
NMT
4.13%
POD
3.95%
T3O
3.82%
Other Families
61.24%
More Families (96)
CYP76
259
3.4%
UGT
215
2.82%
DWF4/CYP90B1
214
2.81%
UFGT
199
2.61%
7DLGT
196
2.57%
F3H
179
2.35%
CAD
171
2.24%
F3'H/CYP75B
152
2.0%
SMT1/SMT2/SMT3
137
1.8%
CYP71
129
1.69%
STR
128
1.68%
SGD
122
1.6%
CODM/T6ODM
108
1.42%
CAS
101
1.33%
TRI/TRII
100
1.31%
CYP90D1
99
1.3%
PMT
91
1.19%
BR6OX2/CYP85A2
83
1.09%
IFR
79
1.04%
TPS
79
1.04%
H6H
73
0.96%
GES
73
0.96%
RAS
70
0.92%
ANR
67
0.88%
GS
65
0.85%
IO
59
0.77%
HCT
58
0.76%
COMT
57
0.75%
CSE
55
0.72%
LAC
55
0.72%
16OMT
54
0.71%
SLS
54
0.71%
7DLH
49
0.64%
FNS
47
0.62%
PYKS
43
0.56%
TAT
42
0.55%
CYP51G1
41
0.54%
T16H
40
0.53%
LAMT
39
0.51%
NCS
37
0.49%
CNMT
36
0.47%
CCR
35
0.46%
SQE
34
0.45%
8HGO
33
0.43%
COR
33
0.43%
F5H/CYP84A
33
0.43%
FPPS
33
0.43%
ROT3/CYP90C1
30
0.39%
BR6OX1/CYP85A1
26
0.34%
CPD/CYP90A1
25
0.33%
F3'5'H/CYP75A
23
0.3%
CCoAOMT
23
0.3%
ANS/LDOX
22
0.29%
BBE
21
0.28%
PAL
21
0.28%
DFR
21
0.28%
G8O/G8H
20
0.26%
MVD
18
0.24%
CHS
16
0.21%
DXS
16
0.21%
MPO
14
0.18%
CPR
14
0.18%
SQS/FDFT1
13
0.17%
AACT
13
0.17%
HPPR
11
0.14%
MVK
11
0.14%
TYDC_DDC
10
0.13%
GGPPS
9
0.12%
CHI
8
0.11%
SMO1/SMO2
8
0.11%
DWF7
8
0.11%
DET2
8
0.11%
MCT/IspD
8
0.11%
ISY
7
0.09%
CYP719
7
0.09%
HMGR
7
0.09%
ADC
6
0.08%
PMK
6
0.08%
HDR/IspH
6
0.08%
CYP80B1
5
0.07%
TDC
5
0.07%
6OMT_4OMT_SOMT
5
0.07%
CPI1
4
0.05%
DWF1
4
0.05%
CMK/IspE
4
0.05%
HDS/IspG
4
0.05%
ODC
3
0.04%
FK
3
0.04%
IDI
3
0.04%
XMT_MXMT_DXMT
2
0.03%
FLS
2
0.03%
HYD1
2
0.03%
DWF5
2
0.03%
HMGS
2
0.03%
MDS/IspF
2
0.03%
DXR
2
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 928 | 19 | BAHD (426) | View species results |
| Alkaloid pathway | 795 | 23 | NMT (170) | View species results |
| Phenylpropanoid pathway | 618 | 11 | POD (289) | View species results |
| Flavonoid pathway | 295 | 9 | UFGT (185) | View species results |
| Steroid pathway | 248 | 13 | CAS (91) | View species results |
| Rosmarinic acid pathway | 244 | 7 | C4H (111) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2844 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 642 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Mesc11G0010500.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mesc11G0013030.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Mesc11G0015450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc11G0016530.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc11G0016530.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc11G0016530.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc12G0013940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc12G0016320.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc12G0016320.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc13G0008780.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc13G0010560.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc13G0013840.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc13G0013880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc14G0000440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc14G0000440.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc14G0009450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc15G0000020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc15G0008880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc15G0008880.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc15G0018510.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc16G0006580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc16G0006580.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc16G0006580.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc17G0000090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Mesc18G0011950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| MescScaffold0120000880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| MescScaffold0120000890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| MescScaffold0120000890.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |