PlantSME Plant secondary metabolism enzyme database

Marchantia polymorpha (marchantia_polymorpha)

Imported from atlas release summary for Marchantia polymorpha.

1186
Candidate Protein Records
908
Pathway-Level Records
2213
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Phenylpropanoid pathway 35.79% Terpenoid pathway 21.37% Alkaloid pathway 17.62% Flavonoid pathway 11.78% Rosmarinic acid pathway 9.03% Steroid pathway 4.41%
Family Distribution
POD 10.57% C4H 6.69% C3'H/CYP98A 5.83% BAHD 5.11% CYP76 4.38% NMT 3.71% 4CL 3.12% IFS 2.67%
Other Families 57.93%
More Families (95)
UFGT 53 2.39% DWF4/CYP90B1 52 2.35% UGT 51 2.3% T3O 49 2.21% 7DLGT 49 2.21% STR 48 2.17% BR6OX2/CYP85A2 48 2.17% F3'H/CYP75B 43 1.94% PAL 39 1.76% PYKS 36 1.63% F3H 35 1.58% COMT 32 1.45% CHS 29 1.31% CAD 28 1.27% GS 26 1.17% G8O/G8H 26 1.17% F3'5'H/CYP75A 26 1.17% TRI/TRII 25 1.13% IFR 24 1.08% TPS 24 1.08% CODM/T6ODM 23 1.04% IO 23 1.04% CYP71 22 0.99% CSE 21 0.95% HCT 21 0.95% RAS 20 0.9% 16OMT 19 0.86% SMT1/SMT2/SMT3 18 0.81% BR6OX1/CYP85A1 18 0.81% ANR 16 0.72% CAS 16 0.72% COR 13 0.59% T16H 13 0.59% H6H 13 0.59% CPD/CYP90A1 13 0.59% 8HGO 11 0.5% SLS 11 0.5% LAMT 11 0.5% CYP719 10 0.45% FPPS 10 0.45% CNMT 9 0.41% 7DLH 9 0.41% FNS 9 0.41% CYP90D1 9 0.41% AACT 9 0.41% CCR 8 0.36% CPR 8 0.36% BBE 7 0.32% CYP80B1 7 0.32% GES 7 0.32% CCoAOMT 7 0.32% TAT 7 0.32% ROT3/CYP90C1 7 0.32% MVK 7 0.32% SGD 6 0.27% CYP80F1 6 0.27% NCS 6 0.27% SQS/FDFT1 6 0.27% PMT 5 0.23% DFR 4 0.18% ANS/LDOX 4 0.18% F5H/CYP84A 4 0.18% LAC 4 0.18% GGPPS 4 0.18% MPO 3 0.14% TYDC_DDC 3 0.14% ISY 3 0.14% CHI 3 0.14% SMO1/SMO2 3 0.14% DET2 3 0.14% DWF5 3 0.14% CYP51G1 3 0.14% MVD 3 0.14% DXR 3 0.14% ODC 2 0.09% HPPR 2 0.09% DWF1 2 0.09% HYD1 2 0.09% DWF7 2 0.09% DXS 2 0.09% PMK 2 0.09% ADC 1 0.05% TDC 1 0.05% FLS 1 0.05% CPI1 1 0.05% SQE 1 0.05% FK 1 0.05% CMK/IspE 1 0.05% MDS/IspF 1 0.05% HMGR 1 0.05% MCT/IspD 1 0.05% IDI 1 0.05% HMGS 1 0.05% HDS/IspG 1 0.05% HDR/IspH 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 325 11 POD (226) View species results
Terpenoid pathway 194 19 BAHD (68) View species results
Alkaloid pathway 160 18 PYKS (28) View species results
Flavonoid pathway 107 8 UFGT (45) View species results
Rosmarinic acid pathway 82 7 C4H (49) View species results
Steroid pathway 40 12 CAS (15) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 832 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 154 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Mpol04G0014860.1 Alkaloid TRI/TRII low borderline
Mpol05G0000670.1 Alkaloid TRI/TRII medium pass
Mpol05G0002540.1 Alkaloid TRI/TRII medium pass
Mpol05G0006080.1 Alkaloid TRI/TRII medium pass
Mpol06G0011080.1 Alkaloid TRI/TRII medium pass
Mpol06G0011120.1 Alkaloid TRI/TRII medium pass
Mpol06G0011530.1 Alkaloid TRI/TRII low borderline
Mpol07G0006010.1 Alkaloid TRI/TRII medium pass
Mpol07G0012290.1 Alkaloid TRI/TRII medium borderline
Mpol08G0016220.1 Alkaloid TRI/TRII low borderline
Mpol03G0018780.1 Alkaloid TYDC_DDC medium borderline
Mpol05G0022920.1 Alkaloid TYDC_DDC low borderline
Mpol07G0006280.1 Alkaloid TYDC_DDC medium borderline