PlantSME Plant secondary metabolism enzyme database

Marsdenia tenacissima (marsdenia_tenacissima)

Imported from atlas release summary for Marsdenia tenacissima.

1596
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.26% Alkaloid pathway 23.12% Phenylpropanoid pathway 17.98% Flavonoid pathway 13.78% Rosmarinic acid pathway 9.52% Steroid pathway 5.33%
Family Distribution
C4H 6.36% C3'H/CYP98A 6.26% BAHD 5.2% UGT 4.22% IFS 4.14% UFGT 4.14% 7DLGT 4.07% T3O 3.89%
Other Families 61.72%
More Families (95)
CYP76 150 3.79% 4CL 132 3.33% POD 120 3.03% F3H 114 2.88% DWF4/CYP90B1 96 2.42% TRI/TRII 85 2.15% F3'H/CYP75B 82 2.07% BR6OX2/CYP85A2 81 2.05% TPS 80 2.02% GES 79 1.99% CODM/T6ODM 66 1.67% CAD 66 1.67% CYP71 65 1.64% CAS 64 1.62% STR 61 1.54% NMT 59 1.49% H6H 55 1.39% SMT1/SMT2/SMT3 47 1.19% LAC 41 1.04% CSE 37 0.93% HCT 34 0.86% CYP90D1 34 0.86% RAS 32 0.81% COMT 31 0.78% SLS 29 0.73% GS 29 0.73% IFR 29 0.73% F5H/CYP84A 29 0.73% IO 27 0.68% PYKS 25 0.63% G8O/G8H 24 0.61% SGD 24 0.61% BBE 24 0.61% ANR 24 0.61% T16H 23 0.58% 16OMT 23 0.58% TAT 23 0.58% CCR 21 0.53% NCS 20 0.51% 7DLH 18 0.45% F3'5'H/CYP75A 18 0.45% PAL 18 0.45% LAMT 17 0.43% CYP51G1 17 0.43% PMT 16 0.4% FNS 16 0.4% TDC 15 0.38% BR6OX1/CYP85A1 14 0.35% ANS/LDOX 13 0.33% FPPS 13 0.33% CNMT 12 0.3% CPD/CYP90A1 12 0.3% COR 11 0.28% 8HGO 10 0.25% DFR 10 0.25% CYP719 8 0.2% MPO 8 0.2% CCoAOMT 8 0.2% CYP80B1 7 0.18% CHS 6 0.15% ROT3/CYP90C1 6 0.15% AACT 6 0.15% CPR 5 0.13% DXS 5 0.13% GGPPS 5 0.13% HPPR 4 0.1% SMO1/SMO2 4 0.1% SQS/FDFT1 4 0.1% ADC 3 0.08% ISY 3 0.08% XMT_MXMT_DXMT 3 0.08% CHI 3 0.08% FLS 3 0.08% DWF1 3 0.08% SQE 3 0.08% DET2 3 0.08% MVK 3 0.08% MVD 3 0.08% 6OMT_4OMT_SOMT 2 0.05% CPI1 2 0.05% HMGR 2 0.05% MDS/IspF 2 0.05% CMK/IspE 2 0.05% PMK 2 0.05% TYDC_DDC 1 0.03% FK 1 0.03% DWF7 1 0.03% DWF5 1 0.03% HYD1 1 0.03% HDS/IspG 1 0.03% HDR/IspH 1 0.03% DXR 1 0.03% IDI 1 0.03% MCT/IspD 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 483 19 BAHD (159) View species results
Alkaloid pathway 369 18 TRI/TRII (76) View species results
Phenylpropanoid pathway 287 12 POD (105) View species results
Flavonoid pathway 220 12 UFGT (153) View species results
Rosmarinic acid pathway 152 7 C4H (64) View species results
Steroid pathway 85 11 CAS (42) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1558 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 272 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TDC
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Gene Pathway Family Confidence Status
marsdenia_tenacissima_EVM0001364.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0004064.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0004240.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0005383.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0005682.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0007161.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0008928.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0008952.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0010673.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0011815.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0012899.2 Alkaloid TDC medium borderline
marsdenia_tenacissima_EVM0014893.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0015990.1 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0016389.2 Alkaloid TDC low borderline
marsdenia_tenacissima_EVM0017901.1 Alkaloid TDC low borderline