PlantSME Plant secondary metabolism enzyme database

Miscanthus lutarioriparius (miscanthus_lutarioriparius)

Imported from atlas release summary for Miscanthus lutarioriparius.

3703
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.71% Alkaloid pathway 22.14% Phenylpropanoid pathway 18.04% Flavonoid pathway 16.42% Rosmarinic acid pathway 9.64% Steroid pathway 5.05%
Family Distribution
C4H 6.31% C3'H/CYP98A 6.02% UGT 5.32% BAHD 4.83% 7DLGT 4.8% UFGT 4.61% CYP76 3.88% 4CL 3.82%
Other Families 60.41%
More Families (98)
T3O 345 3.76% IFS 321 3.5% POD 293 3.19% F3'H/CYP75B 225 2.45% DWF4/CYP90B1 203 2.21% BR6OX2/CYP85A2 198 2.16% F3H 177 1.93% NMT 174 1.9% CYP71 150 1.63% STR 146 1.59% SMT1/SMT2/SMT3 142 1.55% PYKS 122 1.33% CAD 106 1.15% TRI/TRII 91 0.99% CCR 89 0.97% H6H 88 0.96% SLS 86 0.94% CSE 85 0.93% G8O/G8H 84 0.92% LAC 84 0.92% ANR 83 0.9% CAS 83 0.9% CODM/T6ODM 82 0.89% PAL 78 0.85% TPS 76 0.83% IFR 75 0.82% COMT 75 0.82% RAS 75 0.82% F5H/CYP84A 73 0.8% SGD 72 0.78% PMT 70 0.76% T16H 68 0.74% CYP90D1 68 0.74% CYP51G1 68 0.74% FNS 66 0.72% GES 65 0.71% 16OMT 64 0.7% NCS 63 0.69% HCT 61 0.66% CHS 59 0.64% IO 51 0.56% GS 49 0.53% F3'5'H/CYP75A 46 0.5% BR6OX1/CYP85A1 45 0.49% DFR 44 0.48% COR 39 0.42% BBE 38 0.41% CPD/CYP90A1 37 0.4% TYDC_DDC 36 0.39% TAT 33 0.36% ANS/LDOX 26 0.28% HPPR 26 0.28% 8HGO 24 0.26% CNMT 22 0.24% MVK 22 0.24% AACT 22 0.24% FPPS 20 0.22% CYP719 18 0.2% CPR 17 0.19% LAMT 16 0.17% TDC 16 0.17% SQS/FDFT1 16 0.17% CCoAOMT 15 0.16% CYP80B1 14 0.15% GGPPS 14 0.15% 7DLH 13 0.14% ROT3/CYP90C1 12 0.13% CYP80F1 11 0.12% SMO1/SMO2 11 0.12% XMT_MXMT_DXMT 10 0.11% ISY 9 0.1% 6OMT_4OMT_SOMT 9 0.1% MPO 9 0.1% DWF1 9 0.1% ODC 8 0.09% DET2 8 0.09% HMGS 8 0.09% DXS 8 0.09% MVD 7 0.08% ADC 6 0.07% HYD1 6 0.07% IDI 6 0.07% HDS/IspG 6 0.07% HMGR 6 0.07% CHI 5 0.05% MCT/IspD 5 0.05% FLS 4 0.04% SQE 4 0.04% CPI1 4 0.04% CMK/IspE 4 0.04% PMK 3 0.03% HDR/IspH 3 0.03% FK 2 0.02% DWF7 2 0.02% DWF5 2 0.02% DXR 2 0.02% MDS/IspF 2 0.02% GPPS 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1063 21 UGT (450) View species results
Alkaloid pathway 820 27 7DLGT (211) View species results
Phenylpropanoid pathway 668 12 POD (243) View species results
Flavonoid pathway 608 13 UFGT (392) View species results
Rosmarinic acid pathway 357 7 C4H (152) View species results
Steroid pathway 187 13 SMT1/SMT2/SMT3 (68) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3624 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 579 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ODC
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Gene Pathway Family Confidence Status Best Target
Mluta03G0013070.1 Alkaloid ODC medium pass ODC__00002__sp_E0WN94_ODC_NICGL
Mluta03G0014890.1 Alkaloid ODC medium pass ODC__00004__sp_Q9FPK5_ODC_NICGU
Mluta03G0014990.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Mluta04G0011590.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Mluta04G0013170.1 Alkaloid ODC medium pass ODC__00002__sp_E0WN94_ODC_NICGL
Mluta04G0013270.1 Alkaloid ODC medium pass ODC__00003__sp_P93351_ODC1B_TOBAC
Mluta10G0012810.1 Alkaloid ODC medium pass ODC__00002__sp_E0WN94_ODC_NICGL
MlutaMl_utg08700034560.1 Alkaloid ODC medium pass ODC__00002__sp_E0WN94_ODC_NICGL