PlantSME Plant secondary metabolism enzyme database

Miscanthus sinensis (miscanthus_sinensis)

Imported from atlas release summary for Miscanthus sinensis.

3871
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.67% Alkaloid pathway 23.61% Phenylpropanoid pathway 20.2% Flavonoid pathway 13.48% Rosmarinic acid pathway 8.24% Steroid pathway 5.79%
Family Distribution
C4H 6.0% BAHD 5.73% C3'H/CYP98A 5.5% UGT 4.41% POD 4.15% 7DLGT 4.1% UFGT 3.96% 4CL 3.76%
Other Families 62.39%
More Families (98)
CYP76 320 3.43% T3O 291 3.12% IFS 279 2.99% NMT 267 2.86% F3H 216 2.31% F3'H/CYP75B 215 2.3% DWF4/CYP90B1 215 2.3% BR6OX2/CYP85A2 186 1.99% STR 159 1.7% CYP71 159 1.7% SMT1/SMT2/SMT3 146 1.56% CAD 125 1.34% TRI/TRII 121 1.3% CODM/T6ODM 113 1.21% CAS 104 1.11% PMT 100 1.07% TPS 97 1.04% SGD 96 1.03% PYKS 95 1.02% H6H 95 1.02% CCR 94 1.01% ANR 90 0.96% G8O/G8H 89 0.95% SLS 86 0.92% HCT 85 0.91% GES 84 0.9% FNS 83 0.89% RAS 82 0.88% NCS 79 0.85% LAC 79 0.85% IFR 78 0.84% CSE 73 0.78% COMT 66 0.71% T16H 65 0.7% 16OMT 65 0.7% F5H/CYP84A 63 0.67% CYP90D1 60 0.64% F3'5'H/CYP75A 54 0.58% PAL 54 0.58% GS 50 0.54% IO 48 0.51% CYP51G1 47 0.5% DFR 46 0.49% COR 45 0.48% CHS 44 0.47% BR6OX1/CYP85A1 40 0.43% GGPPS 37 0.4% TAT 35 0.37% CPD/CYP90A1 33 0.35% CNMT 32 0.34% ANS/LDOX 31 0.33% LAMT 29 0.31% 7DLH 28 0.3% 8HGO 23 0.25% FPPS 23 0.25% SQS/FDFT1 20 0.21% TYDC_DDC 19 0.2% CYP719 19 0.2% CCoAOMT 19 0.2% CPR 18 0.19% MVK 18 0.19% CYP80B1 17 0.18% HPPR 17 0.18% AACT 16 0.17% XMT_MXMT_DXMT 15 0.16% DWF1 15 0.16% ADC 13 0.14% BBE 12 0.13% SMO1/SMO2 12 0.13% ROT3/CYP90C1 11 0.12% HMGS 11 0.12% DXS 11 0.12% TDC 10 0.11% MVD 10 0.11% ISY 9 0.1% MPO 9 0.1% ODC 9 0.1% DET2 8 0.09% IDI 8 0.09% CYP80F1 7 0.07% DWF7 7 0.07% MCT/IspD 7 0.07% CHI 6 0.06% HYD1 6 0.06% HDS/IspG 6 0.06% 6OMT_4OMT_SOMT 5 0.05% CPI1 5 0.05% HMGR 5 0.05% FLS 4 0.04% SQE 4 0.04% DWF5 3 0.03% PMK 3 0.03% CMK/IspE 3 0.03% GPPS 3 0.03% FK 2 0.02% HDR/IspH 2 0.02% DXR 2 0.02% MDS/IspF 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1110 21 BAHD (401) View species results
Alkaloid pathway 914 23 7DLGT (174) View species results
Phenylpropanoid pathway 782 12 POD (366) View species results
Flavonoid pathway 522 12 UFGT (337) View species results
Rosmarinic acid pathway 319 7 C4H (128) View species results
Steroid pathway 224 13 CAS (83) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3406 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 702 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 16OMT
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Gene Pathway Family Confidence Status Best Target
Msin15G0005940.2 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin16G0020020.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin16G0020050.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin16G0020060.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin16G0020070.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin17G0004840.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin17G0019920.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin17G0019940.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin17G0019950.1 Alkaloid 16OMT medium pass 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msin17G0020380.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msinscaffold001680011780.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msinscaffold001680011790.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msinscaffold001720012030.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msinscaffold013610041840.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO
Msinscaffold027860055070.1 Alkaloid 16OMT medium borderline 16OMT__00001__sp_B0EXJ8_HTOMT_CATRO