Miscanthus sinensis (miscanthus_sinensis)
Imported from atlas release summary for Miscanthus sinensis.
3871
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3871
Candidate Genes
C4H
6.0%
BAHD
5.73%
C3'H/CYP98A
5.5%
UGT
4.41%
POD
4.15%
7DLGT
4.1%
UFGT
3.96%
4CL
3.76%
Other Families
62.39%
More Families (98)
CYP76
320
3.43%
T3O
291
3.12%
IFS
279
2.99%
NMT
267
2.86%
F3H
216
2.31%
F3'H/CYP75B
215
2.3%
DWF4/CYP90B1
215
2.3%
BR6OX2/CYP85A2
186
1.99%
STR
159
1.7%
CYP71
159
1.7%
SMT1/SMT2/SMT3
146
1.56%
CAD
125
1.34%
TRI/TRII
121
1.3%
CODM/T6ODM
113
1.21%
CAS
104
1.11%
PMT
100
1.07%
TPS
97
1.04%
SGD
96
1.03%
PYKS
95
1.02%
H6H
95
1.02%
CCR
94
1.01%
ANR
90
0.96%
G8O/G8H
89
0.95%
SLS
86
0.92%
HCT
85
0.91%
GES
84
0.9%
FNS
83
0.89%
RAS
82
0.88%
NCS
79
0.85%
LAC
79
0.85%
IFR
78
0.84%
CSE
73
0.78%
COMT
66
0.71%
T16H
65
0.7%
16OMT
65
0.7%
F5H/CYP84A
63
0.67%
CYP90D1
60
0.64%
F3'5'H/CYP75A
54
0.58%
PAL
54
0.58%
GS
50
0.54%
IO
48
0.51%
CYP51G1
47
0.5%
DFR
46
0.49%
COR
45
0.48%
CHS
44
0.47%
BR6OX1/CYP85A1
40
0.43%
GGPPS
37
0.4%
TAT
35
0.37%
CPD/CYP90A1
33
0.35%
CNMT
32
0.34%
ANS/LDOX
31
0.33%
LAMT
29
0.31%
7DLH
28
0.3%
8HGO
23
0.25%
FPPS
23
0.25%
SQS/FDFT1
20
0.21%
TYDC_DDC
19
0.2%
CYP719
19
0.2%
CCoAOMT
19
0.2%
CPR
18
0.19%
MVK
18
0.19%
CYP80B1
17
0.18%
HPPR
17
0.18%
AACT
16
0.17%
XMT_MXMT_DXMT
15
0.16%
DWF1
15
0.16%
ADC
13
0.14%
BBE
12
0.13%
SMO1/SMO2
12
0.13%
ROT3/CYP90C1
11
0.12%
HMGS
11
0.12%
DXS
11
0.12%
TDC
10
0.11%
MVD
10
0.11%
ISY
9
0.1%
MPO
9
0.1%
ODC
9
0.1%
DET2
8
0.09%
IDI
8
0.09%
CYP80F1
7
0.07%
DWF7
7
0.07%
MCT/IspD
7
0.07%
CHI
6
0.06%
HYD1
6
0.06%
HDS/IspG
6
0.06%
6OMT_4OMT_SOMT
5
0.05%
CPI1
5
0.05%
HMGR
5
0.05%
FLS
4
0.04%
SQE
4
0.04%
DWF5
3
0.03%
PMK
3
0.03%
CMK/IspE
3
0.03%
GPPS
3
0.03%
FK
2
0.02%
HDR/IspH
2
0.02%
DXR
2
0.02%
MDS/IspF
2
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1110 | 21 | BAHD (401) | View species results |
| Alkaloid pathway | 914 | 23 | 7DLGT (174) | View species results |
| Phenylpropanoid pathway | 782 | 12 | POD (366) | View species results |
| Flavonoid pathway | 522 | 12 | UFGT (337) | View species results |
| Rosmarinic acid pathway | 319 | 7 | C4H (128) | View species results |
| Steroid pathway | 224 | 13 | CAS (83) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3406 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 702 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Msinscaffold001170009170.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Msinscaffold001170009180.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Msinscaffold001170009180.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Msinscaffold001400010270.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Msinscaffold003350019110.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Msinscaffold003670020230.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Msinscaffold006710028730.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Msinscaffold006710028740.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Msinscaffold006710028760.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Msinscaffold007890031640.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Msinscaffold007890031640.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Msinscaffold012230039700.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Msinscaffold013320041390.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Msinscaffold013320041410.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Msinscaffold013320041410.2 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Msinscaffold018070047580.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Msinscaffold018570048070.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Msinscaffold018570048070.2 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Msinscaffold020210050060.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Msinscaffold025440054210.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Msinscaffold027120054840.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |