PlantSME Plant secondary metabolism enzyme database

Nicotiana tabacum (nicotiana_tabacum)

Imported from atlas release summary for Nicotiana tabacum.

3857
Candidate Protein Records
3200
Pathway-Level Records
8259
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.16% Phenylpropanoid pathway 21.19% Alkaloid pathway 20.53% Flavonoid pathway 13.06% Rosmarinic acid pathway 9.0% Steroid pathway 5.06%
Family Distribution
C4H 6.56% C3'H/CYP98A 5.9% BAHD 5.07% UGT 4.31% POD 3.97% 7DLGT 3.94% CYP76 3.89% 4CL 3.71%
Other Families 62.66%
More Families (98)
UFGT 304 3.68% T3O 301 3.64% IFS 284 3.44% F3'H/CYP75B 224 2.71% F3H 204 2.47% BR6OX2/CYP85A2 193 2.34% DWF4/CYP90B1 182 2.2% TPS 170 2.06% NMT 164 1.99% CYP71 151 1.83% STR 127 1.54% GES 126 1.53% CODM/T6ODM 115 1.39% CAS 112 1.36% H6H 107 1.3% CAD 100 1.21% TAT 94 1.14% LAC 91 1.1% TRI/TRII 90 1.09% CSE 89 1.08% T16H 87 1.05% SMT1/SMT2/SMT3 82 0.99% F5H/CYP84A 73 0.88% IO 72 0.87% G8O/G8H 65 0.79% IFR 64 0.77% CYP90D1 63 0.76% SGD 61 0.74% F3'5'H/CYP75A 61 0.74% HCT 58 0.7% COMT 55 0.67% PYKS 52 0.63% BBE 49 0.59% 7DLH 49 0.59% SLS 49 0.59% GS 47 0.57% RAS 47 0.57% FNS 43 0.52% NCS 41 0.5% CPD/CYP90A1 41 0.5% BR6OX1/CYP85A1 40 0.48% CYP51G1 40 0.48% CCR 37 0.45% PMT 33 0.4% 16OMT 31 0.38% LAMT 28 0.34% DFR 28 0.34% ANR 28 0.34% PAL 27 0.33% ANS/LDOX 27 0.33% CNMT 25 0.3% FPPS 24 0.29% COR 21 0.25% ROT3/CYP90C1 20 0.24% 8HGO 19 0.23% CCoAOMT 19 0.23% SQS/FDFT1 17 0.21% CYP80B1 15 0.18% TYDC_DDC 15 0.18% MPO 14 0.17% CYP719 14 0.17% CPR 14 0.17% CHS 13 0.16% AACT 13 0.16% ISY 12 0.15% HPPR 12 0.15% DET2 11 0.13% MVD 11 0.13% 6OMT_4OMT_SOMT 10 0.12% GGPPS 10 0.12% HMGR 10 0.12% XMT_MXMT_DXMT 9 0.11% SMO1/SMO2 9 0.11% MVK 9 0.11% PMK 9 0.11% TDC 8 0.1% ADC 8 0.1% CHI 8 0.1% IDI 8 0.1% DXS 8 0.1% HMGS 7 0.08% FLS 6 0.07% SQE 6 0.07% HDS/IspG 6 0.07% HDR/IspH 6 0.07% DWF1 5 0.06% DWF7 5 0.06% ODC 4 0.05% CYP80F1 4 0.05% HYD1 4 0.05% CMK/IspE 4 0.05% MDS/IspF 4 0.05% CPI1 3 0.04% DXR 3 0.04% DWF5 2 0.02% FK 2 0.02% MCT/IspD 2 0.02% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 997 19 UGT (317) View species results
Phenylpropanoid pathway 678 12 POD (311) View species results
Alkaloid pathway 657 27 7DLGT (125) View species results
Flavonoid pathway 418 14 UFGT (263) View species results
Rosmarinic acid pathway 288 7 C4H (117) View species results
Steroid pathway 162 14 CAS (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 3378 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 524 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
nicotiana_tabacum_Nitab4.5_0010595g0010.1 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
nicotiana_tabacum_Nitab4.5_0011186g0020.1 Rosmarinic Acid 4CL medium pass 4CL__00018__sp_Q9S777_4CL3_ARATH
nicotiana_tabacum_Nitab4.5_0011683g0010.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
nicotiana_tabacum_Nitab4.5_0012336g0030.1 Rosmarinic Acid 4CL low borderline 4CL__00006__sp_P17814_4CL1_ORYSJ
nicotiana_tabacum_Nitab4.5_0012647g0010.1 Rosmarinic Acid 4CL medium pass 4CL__00002__sp_I3PB37_4CL1_PETHY
nicotiana_tabacum_Nitab4.5_0013181g0010.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH