Nicotiana tabacum (nicotiana_tabacum)
Imported from atlas release summary for Nicotiana tabacum.
3200
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3200
Candidate Genes
C4H
6.56%
C3'H/CYP98A
5.9%
BAHD
5.07%
UGT
4.31%
POD
3.97%
7DLGT
3.94%
CYP76
3.89%
4CL
3.71%
Other Families
62.66%
More Families (98)
UFGT
304
3.68%
T3O
301
3.64%
IFS
284
3.44%
F3'H/CYP75B
224
2.71%
F3H
204
2.47%
BR6OX2/CYP85A2
193
2.34%
DWF4/CYP90B1
182
2.2%
TPS
170
2.06%
NMT
164
1.99%
CYP71
151
1.83%
STR
127
1.54%
GES
126
1.53%
CODM/T6ODM
115
1.39%
CAS
112
1.36%
H6H
107
1.3%
CAD
100
1.21%
TAT
94
1.14%
LAC
91
1.1%
TRI/TRII
90
1.09%
CSE
89
1.08%
T16H
87
1.05%
SMT1/SMT2/SMT3
82
0.99%
F5H/CYP84A
73
0.88%
IO
72
0.87%
G8O/G8H
65
0.79%
IFR
64
0.77%
CYP90D1
63
0.76%
SGD
61
0.74%
F3'5'H/CYP75A
61
0.74%
HCT
58
0.7%
COMT
55
0.67%
PYKS
52
0.63%
BBE
49
0.59%
7DLH
49
0.59%
SLS
49
0.59%
GS
47
0.57%
RAS
47
0.57%
FNS
43
0.52%
NCS
41
0.5%
CPD/CYP90A1
41
0.5%
BR6OX1/CYP85A1
40
0.48%
CYP51G1
40
0.48%
CCR
37
0.45%
PMT
33
0.4%
16OMT
31
0.38%
LAMT
28
0.34%
DFR
28
0.34%
ANR
28
0.34%
PAL
27
0.33%
ANS/LDOX
27
0.33%
CNMT
25
0.3%
FPPS
24
0.29%
COR
21
0.25%
ROT3/CYP90C1
20
0.24%
8HGO
19
0.23%
CCoAOMT
19
0.23%
SQS/FDFT1
17
0.21%
CYP80B1
15
0.18%
TYDC_DDC
15
0.18%
MPO
14
0.17%
CYP719
14
0.17%
CPR
14
0.17%
CHS
13
0.16%
AACT
13
0.16%
ISY
12
0.15%
HPPR
12
0.15%
DET2
11
0.13%
MVD
11
0.13%
6OMT_4OMT_SOMT
10
0.12%
GGPPS
10
0.12%
HMGR
10
0.12%
XMT_MXMT_DXMT
9
0.11%
SMO1/SMO2
9
0.11%
MVK
9
0.11%
PMK
9
0.11%
TDC
8
0.1%
ADC
8
0.1%
CHI
8
0.1%
IDI
8
0.1%
DXS
8
0.1%
HMGS
7
0.08%
FLS
6
0.07%
SQE
6
0.07%
HDS/IspG
6
0.07%
HDR/IspH
6
0.07%
DWF1
5
0.06%
DWF7
5
0.06%
ODC
4
0.05%
CYP80F1
4
0.05%
HYD1
4
0.05%
CMK/IspE
4
0.05%
MDS/IspF
4
0.05%
CPI1
3
0.04%
DXR
3
0.04%
DWF5
2
0.02%
FK
2
0.02%
MCT/IspD
2
0.02%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 997 | 19 | UGT (317) | View species results |
| Phenylpropanoid pathway | 678 | 12 | POD (311) | View species results |
| Alkaloid pathway | 657 | 27 | 7DLGT (125) | View species results |
| Flavonoid pathway | 418 | 14 | UFGT (263) | View species results |
| Rosmarinic acid pathway | 288 | 7 | C4H (117) | View species results |
| Steroid pathway | 162 | 14 | CAS (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3378 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 524 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_tabacum_Nitab4.5_0000006g0050.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| nicotiana_tabacum_Nitab4.5_0000007g0230.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000020g0330.1 | Phenylpropanoid | POD | low | borderline | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| nicotiana_tabacum_Nitab4.5_0000021g0090.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000022g0310.1 | Phenylpropanoid | POD | medium | pass | POD__00020__sp_Q9FE01_APX2_ORYSJ |
| nicotiana_tabacum_Nitab4.5_0000027g0480.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| nicotiana_tabacum_Nitab4.5_0000029g0110.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000033g0240.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| nicotiana_tabacum_Nitab4.5_0000038g0180.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000055g0250.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| nicotiana_tabacum_Nitab4.5_0000069g0300.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000078g0210.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| nicotiana_tabacum_Nitab4.5_0000099g0080.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| nicotiana_tabacum_Nitab4.5_0000099g0090.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| nicotiana_tabacum_Nitab4.5_0000099g0140.1 | Phenylpropanoid | POD | low | borderline | POD__00010__sp_P84516_PER1_SORBI |
| nicotiana_tabacum_Nitab4.5_0000121g0050.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000128g0330.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| nicotiana_tabacum_Nitab4.5_0000129g0390.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000130g0120.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| nicotiana_tabacum_Nitab4.5_0000132g0220.1 | Phenylpropanoid | POD | medium | pass | POD__00026__sp_Q9XEX2_PRX2B_ARATH |
| nicotiana_tabacum_Nitab4.5_0000136g0190.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| nicotiana_tabacum_Nitab4.5_0000141g0040.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| nicotiana_tabacum_Nitab4.5_0000149g0130.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| nicotiana_tabacum_Nitab4.5_0000184g0210.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| nicotiana_tabacum_Nitab4.5_0000185g0220.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| nicotiana_tabacum_Nitab4.5_0000189g0320.1 | Phenylpropanoid | POD | low | borderline | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000192g0130.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| nicotiana_tabacum_Nitab4.5_0000192g0140.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| nicotiana_tabacum_Nitab4.5_0000204g0010.1 | Phenylpropanoid | POD | medium | pass | POD__00007__sp_P0C5C9_REHYA_ORYSJ |
| nicotiana_tabacum_Nitab4.5_0000209g0170.1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| nicotiana_tabacum_Nitab4.5_0000222g0240.1 | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| nicotiana_tabacum_Nitab4.5_0000224g0020.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| nicotiana_tabacum_Nitab4.5_0000227g0360.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| nicotiana_tabacum_Nitab4.5_0000241g0260.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| nicotiana_tabacum_Nitab4.5_0000242g0070.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| nicotiana_tabacum_Nitab4.5_0000249g0170.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000257g0130.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| nicotiana_tabacum_Nitab4.5_0000263g0180.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000263g0190.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000264g0130.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| nicotiana_tabacum_Nitab4.5_0000264g0150.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| nicotiana_tabacum_Nitab4.5_0000267g0070.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| nicotiana_tabacum_Nitab4.5_0000270g0080.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| nicotiana_tabacum_Nitab4.5_0000273g0080.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000273g0180.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000355g0100.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000372g0040.1 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| nicotiana_tabacum_Nitab4.5_0000375g0150.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| nicotiana_tabacum_Nitab4.5_0000376g0090.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| nicotiana_tabacum_Nitab4.5_0000400g0030.1 | Phenylpropanoid | POD | medium | pass | POD__00016__sp_Q6QPJ6_PRXQ_POPJC |