Nicotiana tabacum (nicotiana_tabacum)
Imported from atlas release summary for Nicotiana tabacum.
3857
Candidate Protein Records
3200
Pathway-Level Records
8259
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
8259
Family-Level Calls
C4H
6.56%
C3'H/CYP98A
5.9%
BAHD
5.07%
UGT
4.31%
POD
3.97%
7DLGT
3.94%
CYP76
3.89%
4CL
3.71%
Other Families
62.66%
More Families (98)
UFGT
304
3.68%
T3O
301
3.64%
IFS
284
3.44%
F3'H/CYP75B
224
2.71%
F3H
204
2.47%
BR6OX2/CYP85A2
193
2.34%
DWF4/CYP90B1
182
2.2%
TPS
170
2.06%
NMT
164
1.99%
CYP71
151
1.83%
STR
127
1.54%
GES
126
1.53%
CODM/T6ODM
115
1.39%
CAS
112
1.36%
H6H
107
1.3%
CAD
100
1.21%
TAT
94
1.14%
LAC
91
1.1%
TRI/TRII
90
1.09%
CSE
89
1.08%
T16H
87
1.05%
SMT1/SMT2/SMT3
82
0.99%
F5H/CYP84A
73
0.88%
IO
72
0.87%
G8O/G8H
65
0.79%
IFR
64
0.77%
CYP90D1
63
0.76%
SGD
61
0.74%
F3'5'H/CYP75A
61
0.74%
HCT
58
0.7%
COMT
55
0.67%
PYKS
52
0.63%
BBE
49
0.59%
7DLH
49
0.59%
SLS
49
0.59%
GS
47
0.57%
RAS
47
0.57%
FNS
43
0.52%
NCS
41
0.5%
CPD/CYP90A1
41
0.5%
BR6OX1/CYP85A1
40
0.48%
CYP51G1
40
0.48%
CCR
37
0.45%
PMT
33
0.4%
16OMT
31
0.38%
LAMT
28
0.34%
DFR
28
0.34%
ANR
28
0.34%
PAL
27
0.33%
ANS/LDOX
27
0.33%
CNMT
25
0.3%
FPPS
24
0.29%
COR
21
0.25%
ROT3/CYP90C1
20
0.24%
8HGO
19
0.23%
CCoAOMT
19
0.23%
SQS/FDFT1
17
0.21%
CYP80B1
15
0.18%
TYDC_DDC
15
0.18%
MPO
14
0.17%
CYP719
14
0.17%
CPR
14
0.17%
CHS
13
0.16%
AACT
13
0.16%
ISY
12
0.15%
HPPR
12
0.15%
DET2
11
0.13%
MVD
11
0.13%
6OMT_4OMT_SOMT
10
0.12%
GGPPS
10
0.12%
HMGR
10
0.12%
XMT_MXMT_DXMT
9
0.11%
SMO1/SMO2
9
0.11%
MVK
9
0.11%
PMK
9
0.11%
TDC
8
0.1%
ADC
8
0.1%
CHI
8
0.1%
IDI
8
0.1%
DXS
8
0.1%
HMGS
7
0.08%
FLS
6
0.07%
SQE
6
0.07%
HDS/IspG
6
0.07%
HDR/IspH
6
0.07%
DWF1
5
0.06%
DWF7
5
0.06%
ODC
4
0.05%
CYP80F1
4
0.05%
HYD1
4
0.05%
CMK/IspE
4
0.05%
MDS/IspF
4
0.05%
CPI1
3
0.04%
DXR
3
0.04%
DWF5
2
0.02%
FK
2
0.02%
MCT/IspD
2
0.02%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 997 | 19 | UGT (317) | View species results |
| Phenylpropanoid pathway | 678 | 12 | POD (311) | View species results |
| Alkaloid pathway | 657 | 27 | 7DLGT (125) | View species results |
| Flavonoid pathway | 418 | 14 | UFGT (263) | View species results |
| Rosmarinic acid pathway | 288 | 7 | C4H (117) | View species results |
| Steroid pathway | 162 | 14 | CAS (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3378 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 524 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_tabacum_Nitab4.5_0002326g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00087__sp_Q9M3B1_WSD6_ARATH |
| nicotiana_tabacum_Nitab4.5_0002326g0040.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| nicotiana_tabacum_Nitab4.5_0002326g0120.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| nicotiana_tabacum_Nitab4.5_0002334g0120.1 | Terpenoid | BAHD | medium | pass | BAHD__00089__sp_Q9SB58_ZDH19_ARATH |
| nicotiana_tabacum_Nitab4.5_0002356g0040.1 | Terpenoid | BAHD | low | borderline | BAHD__00032__sp_P0DO84_AT_STRNX |
| nicotiana_tabacum_Nitab4.5_0002356g0060.1 | Terpenoid | BAHD | low | borderline | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| nicotiana_tabacum_Nitab4.5_0002389g0100.1 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |
| nicotiana_tabacum_Nitab4.5_0002392g0080.1 | Terpenoid | BAHD | medium | pass | BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH |
| nicotiana_tabacum_Nitab4.5_0002450g0050.1 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| nicotiana_tabacum_Nitab4.5_0002577g0020.1 | Terpenoid | BAHD | medium | pass | BAHD__00089__sp_Q9SB58_ZDH19_ARATH |
| nicotiana_tabacum_Nitab4.5_0002590g0030.1 | Terpenoid | BAHD | low | borderline | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| nicotiana_tabacum_Nitab4.5_0002623g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| nicotiana_tabacum_Nitab4.5_0002642g0100.1 | Terpenoid | BAHD | medium | pass | BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE |
| nicotiana_tabacum_Nitab4.5_0002657g0020.1 | Terpenoid | BAHD | low | borderline | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| nicotiana_tabacum_Nitab4.5_0002700g0220.1 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| nicotiana_tabacum_Nitab4.5_0002720g0050.1 | Terpenoid | BAHD | low | borderline | BAHD__00023__sp_O22975_LPAAT_ARATH |
| nicotiana_tabacum_Nitab4.5_0002724g0070.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| nicotiana_tabacum_Nitab4.5_0002740g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| nicotiana_tabacum_Nitab4.5_0002742g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00020__sp_K4D9Y4_ASAT3_SOLLC |
| nicotiana_tabacum_Nitab4.5_0002742g0060.1 | Terpenoid | BAHD | medium | pass | BAHD__00020__sp_K4D9Y4_ASAT3_SOLLC |
| nicotiana_tabacum_Nitab4.5_0002744g0010.1 | Terpenoid | BAHD | low | borderline | BAHD__00023__sp_O22975_LPAAT_ARATH |
| nicotiana_tabacum_Nitab4.5_0002752g0050.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| nicotiana_tabacum_Nitab4.5_0002765g0050.1 | Terpenoid | BAHD | low | borderline | BAHD__00028__sp_O80467_SDT_ARATH |
| nicotiana_tabacum_Nitab4.5_0002775g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| nicotiana_tabacum_Nitab4.5_0002776g0040.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| nicotiana_tabacum_Nitab4.5_0002795g0120.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| nicotiana_tabacum_Nitab4.5_0002796g0040.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| nicotiana_tabacum_Nitab4.5_0002796g0050.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| nicotiana_tabacum_Nitab4.5_0002824g0090.1 | Terpenoid | BAHD | medium | pass | BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE |
| nicotiana_tabacum_Nitab4.5_0002842g0110.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| nicotiana_tabacum_Nitab4.5_0002847g0060.1 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| nicotiana_tabacum_Nitab4.5_0002853g0090.1 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| nicotiana_tabacum_Nitab4.5_0002879g0120.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| nicotiana_tabacum_Nitab4.5_0002886g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| nicotiana_tabacum_Nitab4.5_0002891g0070.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| nicotiana_tabacum_Nitab4.5_0002893g0040.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| nicotiana_tabacum_Nitab4.5_0002929g0030.1 | Terpenoid | BAHD | low | borderline | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| nicotiana_tabacum_Nitab4.5_0003002g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| nicotiana_tabacum_Nitab4.5_0003002g0030.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| nicotiana_tabacum_Nitab4.5_0003027g0040.1 | Terpenoid | BAHD | low | borderline | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| nicotiana_tabacum_Nitab4.5_0003092g0040.1 | Terpenoid | BAHD | medium | pass | BAHD__00084__sp_Q9M115_ZDH16_ARATH |
| nicotiana_tabacum_Nitab4.5_0003141g0040.1 | Terpenoid | BAHD | medium | pass | BAHD__00021__sp_K7K424_DAT2D_SOYBN |
| nicotiana_tabacum_Nitab4.5_0003182g0050.1 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| nicotiana_tabacum_Nitab4.5_0003195g0050.1 | Terpenoid | BAHD | low | borderline | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| nicotiana_tabacum_Nitab4.5_0003246g0140.1 | Terpenoid | BAHD | medium | pass | BAHD__00057__sp_Q8L7R3_LPCT1_ARATH |
| nicotiana_tabacum_Nitab4.5_0003275g0010.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| nicotiana_tabacum_Nitab4.5_0003275g0040.1 | Terpenoid | BAHD | medium | pass | BAHD__00020__sp_K4D9Y4_ASAT3_SOLLC |
| nicotiana_tabacum_Nitab4.5_0003295g0190.1 | Terpenoid | BAHD | medium | pass | BAHD__00041__sp_Q4VCM1_LCAT2_ARATH |
| nicotiana_tabacum_Nitab4.5_0003303g0020.1 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| nicotiana_tabacum_Nitab4.5_0003307g0020.1 | Terpenoid | BAHD | medium | pass | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |