PlantSME Plant secondary metabolism enzyme database

Nicotiana tabacum (nicotiana_tabacum)

Imported from atlas release summary for Nicotiana tabacum.

3200
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.16% Phenylpropanoid pathway 21.19% Alkaloid pathway 20.53% Flavonoid pathway 13.06% Rosmarinic acid pathway 9.0% Steroid pathway 5.06%
Family Distribution
C4H 6.56% C3'H/CYP98A 5.9% BAHD 5.07% UGT 4.31% POD 3.97% 7DLGT 3.94% CYP76 3.89% 4CL 3.71%
Other Families 62.66%
More Families (98)
UFGT 304 3.68% T3O 301 3.64% IFS 284 3.44% F3'H/CYP75B 224 2.71% F3H 204 2.47% BR6OX2/CYP85A2 193 2.34% DWF4/CYP90B1 182 2.2% TPS 170 2.06% NMT 164 1.99% CYP71 151 1.83% STR 127 1.54% GES 126 1.53% CODM/T6ODM 115 1.39% CAS 112 1.36% H6H 107 1.3% CAD 100 1.21% TAT 94 1.14% LAC 91 1.1% TRI/TRII 90 1.09% CSE 89 1.08% T16H 87 1.05% SMT1/SMT2/SMT3 82 0.99% F5H/CYP84A 73 0.88% IO 72 0.87% G8O/G8H 65 0.79% IFR 64 0.77% CYP90D1 63 0.76% SGD 61 0.74% F3'5'H/CYP75A 61 0.74% HCT 58 0.7% COMT 55 0.67% PYKS 52 0.63% BBE 49 0.59% 7DLH 49 0.59% SLS 49 0.59% GS 47 0.57% RAS 47 0.57% FNS 43 0.52% NCS 41 0.5% CPD/CYP90A1 41 0.5% BR6OX1/CYP85A1 40 0.48% CYP51G1 40 0.48% CCR 37 0.45% PMT 33 0.4% 16OMT 31 0.38% LAMT 28 0.34% DFR 28 0.34% ANR 28 0.34% PAL 27 0.33% ANS/LDOX 27 0.33% CNMT 25 0.3% FPPS 24 0.29% COR 21 0.25% ROT3/CYP90C1 20 0.24% 8HGO 19 0.23% CCoAOMT 19 0.23% SQS/FDFT1 17 0.21% CYP80B1 15 0.18% TYDC_DDC 15 0.18% MPO 14 0.17% CYP719 14 0.17% CPR 14 0.17% CHS 13 0.16% AACT 13 0.16% ISY 12 0.15% HPPR 12 0.15% DET2 11 0.13% MVD 11 0.13% 6OMT_4OMT_SOMT 10 0.12% GGPPS 10 0.12% HMGR 10 0.12% XMT_MXMT_DXMT 9 0.11% SMO1/SMO2 9 0.11% MVK 9 0.11% PMK 9 0.11% TDC 8 0.1% ADC 8 0.1% CHI 8 0.1% IDI 8 0.1% DXS 8 0.1% HMGS 7 0.08% FLS 6 0.07% SQE 6 0.07% HDS/IspG 6 0.07% HDR/IspH 6 0.07% DWF1 5 0.06% DWF7 5 0.06% ODC 4 0.05% CYP80F1 4 0.05% HYD1 4 0.05% CMK/IspE 4 0.05% MDS/IspF 4 0.05% CPI1 3 0.04% DXR 3 0.04% DWF5 2 0.02% FK 2 0.02% MCT/IspD 2 0.02% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 997 19 UGT (317) View species results
Phenylpropanoid pathway 678 12 POD (311) View species results
Alkaloid pathway 657 27 7DLGT (125) View species results
Flavonoid pathway 418 14 UFGT (263) View species results
Rosmarinic acid pathway 288 7 C4H (117) View species results
Steroid pathway 162 14 CAS (67) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 3378 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 524 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
nicotiana_tabacum_Nitab4.5_0009504g0020.1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
nicotiana_tabacum_Nitab4.5_0009671g0030.1 Alkaloid NMT medium pass NMT__00055__sp_Q9FNC7_SUVR2_ARATH
nicotiana_tabacum_Nitab4.5_0010612g0010.1 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
nicotiana_tabacum_Nitab4.5_0011600g0030.1 Alkaloid NMT low borderline NMT__00019__sp_O22781_SUVH2_ARATH
nicotiana_tabacum_Nitab4.5_0011657g0020.1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
nicotiana_tabacum_Nitab4.5_0011832g0010.1 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
nicotiana_tabacum_Nitab4.5_0011915g0020.1 Alkaloid NMT medium pass NMT__00030__sp_Q43088_RBCMT_PEA
nicotiana_tabacum_Nitab4.5_0011970g0030.1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
nicotiana_tabacum_Nitab4.5_0012058g0010.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
nicotiana_tabacum_Nitab4.5_0012635g0020.1 Alkaloid NMT medium pass NMT__00023__sp_O82210_ANM12_ARATH
nicotiana_tabacum_Nitab4.5_0013364g0010.1 Alkaloid NMT medium borderline NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI
nicotiana_tabacum_Nitab4.5_0020175g0010.1 Alkaloid NMT medium pass NMT__00041__sp_Q8GWT4_ANM15_ARATH
nicotiana_tabacum_Nitab4.5_0021451g0010.1 Alkaloid NMT medium borderline NMT__00011__sp_A9X7L0_ANMT_RUTGR
nicotiana_tabacum_Nitab4.5_0026039g0010.1 Alkaloid NMT medium pass NMT__00024__sp_P0CB22_ATX2_ARATH