Nicotiana tabacum (nicotiana_tabacum)
Imported from atlas release summary for Nicotiana tabacum.
3200
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
3200
Candidate Genes
C4H
6.56%
C3'H/CYP98A
5.9%
BAHD
5.07%
UGT
4.31%
POD
3.97%
7DLGT
3.94%
CYP76
3.89%
4CL
3.71%
Other Families
62.66%
More Families (98)
UFGT
304
3.68%
T3O
301
3.64%
IFS
284
3.44%
F3'H/CYP75B
224
2.71%
F3H
204
2.47%
BR6OX2/CYP85A2
193
2.34%
DWF4/CYP90B1
182
2.2%
TPS
170
2.06%
NMT
164
1.99%
CYP71
151
1.83%
STR
127
1.54%
GES
126
1.53%
CODM/T6ODM
115
1.39%
CAS
112
1.36%
H6H
107
1.3%
CAD
100
1.21%
TAT
94
1.14%
LAC
91
1.1%
TRI/TRII
90
1.09%
CSE
89
1.08%
T16H
87
1.05%
SMT1/SMT2/SMT3
82
0.99%
F5H/CYP84A
73
0.88%
IO
72
0.87%
G8O/G8H
65
0.79%
IFR
64
0.77%
CYP90D1
63
0.76%
SGD
61
0.74%
F3'5'H/CYP75A
61
0.74%
HCT
58
0.7%
COMT
55
0.67%
PYKS
52
0.63%
BBE
49
0.59%
7DLH
49
0.59%
SLS
49
0.59%
GS
47
0.57%
RAS
47
0.57%
FNS
43
0.52%
NCS
41
0.5%
CPD/CYP90A1
41
0.5%
BR6OX1/CYP85A1
40
0.48%
CYP51G1
40
0.48%
CCR
37
0.45%
PMT
33
0.4%
16OMT
31
0.38%
LAMT
28
0.34%
DFR
28
0.34%
ANR
28
0.34%
PAL
27
0.33%
ANS/LDOX
27
0.33%
CNMT
25
0.3%
FPPS
24
0.29%
COR
21
0.25%
ROT3/CYP90C1
20
0.24%
8HGO
19
0.23%
CCoAOMT
19
0.23%
SQS/FDFT1
17
0.21%
CYP80B1
15
0.18%
TYDC_DDC
15
0.18%
MPO
14
0.17%
CYP719
14
0.17%
CPR
14
0.17%
CHS
13
0.16%
AACT
13
0.16%
ISY
12
0.15%
HPPR
12
0.15%
DET2
11
0.13%
MVD
11
0.13%
6OMT_4OMT_SOMT
10
0.12%
GGPPS
10
0.12%
HMGR
10
0.12%
XMT_MXMT_DXMT
9
0.11%
SMO1/SMO2
9
0.11%
MVK
9
0.11%
PMK
9
0.11%
TDC
8
0.1%
ADC
8
0.1%
CHI
8
0.1%
IDI
8
0.1%
DXS
8
0.1%
HMGS
7
0.08%
FLS
6
0.07%
SQE
6
0.07%
HDS/IspG
6
0.07%
HDR/IspH
6
0.07%
DWF1
5
0.06%
DWF7
5
0.06%
ODC
4
0.05%
CYP80F1
4
0.05%
HYD1
4
0.05%
CMK/IspE
4
0.05%
MDS/IspF
4
0.05%
CPI1
3
0.04%
DXR
3
0.04%
DWF5
2
0.02%
FK
2
0.02%
MCT/IspD
2
0.02%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 997 | 19 | UGT (317) | View species results |
| Phenylpropanoid pathway | 678 | 12 | POD (311) | View species results |
| Alkaloid pathway | 657 | 27 | 7DLGT (125) | View species results |
| Flavonoid pathway | 418 | 14 | UFGT (263) | View species results |
| Rosmarinic acid pathway | 288 | 7 | C4H (117) | View species results |
| Steroid pathway | 162 | 14 | CAS (67) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 3378 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 524 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: UGT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_tabacum_Nitab4.5_0001033g0020.1 | Terpenoid | UGT | low | borderline | UGT__00043__sp_K4GHS2_73C13_BARVU |
| nicotiana_tabacum_Nitab4.5_0001043g0030.1 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| nicotiana_tabacum_Nitab4.5_0001073g0010.1 | Terpenoid | UGT | medium | pass | UGT__00001__sp_A0A067YB04_UGT1_PUEML |
| nicotiana_tabacum_Nitab4.5_0001073g0020.1 | Terpenoid | UGT | medium | pass | UGT__00112__sp_Q9ZQG4_U73B5_ARATH |
| nicotiana_tabacum_Nitab4.5_0001073g0030.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| nicotiana_tabacum_Nitab4.5_0001100g0010.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| nicotiana_tabacum_Nitab4.5_0001123g0020.1 | Terpenoid | UGT | medium | pass | UGT__00103__sp_Q9M156_U72B1_ARATH |
| nicotiana_tabacum_Nitab4.5_0001212g0100.1 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| nicotiana_tabacum_Nitab4.5_0001216g0020.1 | Terpenoid | UGT | low | borderline | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| nicotiana_tabacum_Nitab4.5_0001220g0050.1 | Terpenoid | UGT | medium | pass | UGT__00078__sp_Q8W491_U73B3_ARATH |
| nicotiana_tabacum_Nitab4.5_0001225g0190.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_tabacum_Nitab4.5_0001279g0180.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| nicotiana_tabacum_Nitab4.5_0001279g0190.1 | Terpenoid | UGT | medium | pass | UGT__00002__sp_A0A067YBQ3_UGT13_PUEML |
| nicotiana_tabacum_Nitab4.5_0001279g0200.1 | Terpenoid | UGT | medium | pass | UGT__00057__sp_O81498_U72E3_ARATH |
| nicotiana_tabacum_Nitab4.5_0001372g0010.1 | Terpenoid | UGT | medium | pass | UGT__00033__sp_F8WKW8_UGT9_GARJA |
| nicotiana_tabacum_Nitab4.5_0001387g0020.1 | Terpenoid | UGT | medium | pass | UGT__00086__sp_Q9LFJ8_U78D2_ARATH |
| nicotiana_tabacum_Nitab4.5_0001410g0160.1 | Terpenoid | UGT | low | borderline | UGT__00047__sp_K7NBW3_74AC1_SIRGR |
| nicotiana_tabacum_Nitab4.5_0001410g0210.1 | Terpenoid | UGT | medium | pass | UGT__00015__sp_A0A193AU77_GGT24_PUNGR |
| nicotiana_tabacum_Nitab4.5_0001436g0020.1 | Terpenoid | UGT | medium | pass | UGT__00105__sp_Q9SK82_U85A1_ARATH |
| nicotiana_tabacum_Nitab4.5_0001458g0060.1 | Terpenoid | UGT | medium | pass | UGT__00015__sp_A0A193AU77_GGT24_PUNGR |
| nicotiana_tabacum_Nitab4.5_0001458g0090.1 | Terpenoid | UGT | medium | pass | UGT__00015__sp_A0A193AU77_GGT24_PUNGR |
| nicotiana_tabacum_Nitab4.5_0001487g0020.1 | Terpenoid | UGT | medium | pass | UGT__00067__sp_P0DO74_GT742_SIRGR |
| nicotiana_tabacum_Nitab4.5_0001569g0010.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_tabacum_Nitab4.5_0001574g0010.1 | Terpenoid | UGT | medium | pass | UGT__00021__sp_A7MAS5_75L17_MALDO |
| nicotiana_tabacum_Nitab4.5_0001574g0030.1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| nicotiana_tabacum_Nitab4.5_0001574g0040.1 | Terpenoid | UGT | medium | pass | UGT__00038__sp_K4CWS6_U75C1_SOLLC |
| nicotiana_tabacum_Nitab4.5_0001583g0150.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_tabacum_Nitab4.5_0001585g0070.1 | Terpenoid | UGT | medium | pass | UGT__00111__sp_Q9ZQ99_U73C1_ARATH |
| nicotiana_tabacum_Nitab4.5_0001585g0080.1 | Terpenoid | UGT | medium | pass | UGT__00040__sp_K4D422_U73C4_SOLLC |
| nicotiana_tabacum_Nitab4.5_0001598g0040.1 | Terpenoid | UGT | low | borderline | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| nicotiana_tabacum_Nitab4.5_0001598g0050.1 | Terpenoid | UGT | low | borderline | UGT__00013__sp_A0A172J2D0_UGT2_PUEML |
| nicotiana_tabacum_Nitab4.5_0001636g0070.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |
| nicotiana_tabacum_Nitab4.5_0001649g0040.1 | Terpenoid | UGT | medium | pass | UGT__00079__sp_Q94A84_U72E1_ARATH |
| nicotiana_tabacum_Nitab4.5_0001704g0090.1 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| nicotiana_tabacum_Nitab4.5_0001704g0100.1 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| nicotiana_tabacum_Nitab4.5_0001709g0060.1 | Terpenoid | UGT | medium | pass | UGT__00019__sp_A0A2R4LMF9_73C25_BARVU |
| nicotiana_tabacum_Nitab4.5_0001709g0070.1 | Terpenoid | UGT | medium | pass | UGT__00090__sp_Q9LML7_U71C3_ARATH |
| nicotiana_tabacum_Nitab4.5_0001727g0010.1 | Terpenoid | UGT | medium | pass | UGT__00075__sp_Q7Y232_U73B4_ARATH |
| nicotiana_tabacum_Nitab4.5_0001766g0040.1 | Terpenoid | UGT | medium | pass | UGT__00115__sp_U3U992_UGT8_CATRO |
| nicotiana_tabacum_Nitab4.5_0001843g0110.1 | Terpenoid | UGT | low | borderline | UGT__00092__sp_Q9LNI1_U72B3_ARATH |
| nicotiana_tabacum_Nitab4.5_0001879g0100.1 | Terpenoid | UGT | low | borderline | UGT__00001__sp_A0A067YB04_UGT1_PUEML |
| nicotiana_tabacum_Nitab4.5_0001931g0060.1 | Terpenoid | UGT | medium | pass | UGT__00033__sp_F8WKW8_UGT9_GARJA |
| nicotiana_tabacum_Nitab4.5_0001979g0030.1 | Terpenoid | UGT | medium | pass | UGT__00032__sp_F8WKW1_UGT2_GARJA |
| nicotiana_tabacum_Nitab4.5_0001980g0010.1 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| nicotiana_tabacum_Nitab4.5_0001980g0040.1 | Terpenoid | UGT | medium | pass | UGT__00108__sp_Q9SYK9_U74E2_ARATH |
| nicotiana_tabacum_Nitab4.5_0002002g0140.1 | Terpenoid | UGT | medium | pass | UGT__00045__sp_K4GKX2_73C10_BARVU |
| nicotiana_tabacum_Nitab4.5_0002015g0050.1 | Terpenoid | UGT | medium | pass | UGT__00081__sp_Q9C768_U76B1_ARATH |
| nicotiana_tabacum_Nitab4.5_0002039g0060.1 | Terpenoid | UGT | medium | pass | UGT__00063__sp_P0DO67_GT943_SIRGR |
| nicotiana_tabacum_Nitab4.5_0002088g0010.1 | Terpenoid | UGT | low | borderline | UGT__00103__sp_Q9M156_U72B1_ARATH |
| nicotiana_tabacum_Nitab4.5_0002095g0110.1 | Terpenoid | UGT | medium | pass | UGT__00024__sp_B3VI56_U91D2_STERE |