PlantSME Plant secondary metabolism enzyme database

Nicotiana tomentosiformis (nicotiana_tomentosiformis)

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Imported from atlas release summary for Nicotiana tomentosiformis.

1937
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.01% Alkaloid pathway 21.84% Phenylpropanoid pathway 20.86% Flavonoid pathway 11.56% Rosmarinic acid pathway 9.29% Steroid pathway 7.43%
Family Distribution
BAHD 6.07% C4H 5.94% C3'H/CYP98A 5.29% POD 4.48% NMT 4.46% 4CL 3.99% UFGT 3.75% UGT 3.62%
Other Families 62.41%
More Families (97)
T3O 165 3.54% 7DLGT 160 3.43% IFS 154 3.3% CYP76 148 3.17% F3H 126 2.7% F3'H/CYP75B 100 2.14% DWF4/CYP90B1 97 2.08% STR 90 1.93% BR6OX2/CYP85A2 84 1.8% CYP71 80 1.71% CAS 77 1.65% TPS 75 1.61% IFR 68 1.46% CAD 68 1.46% TRI/TRII 67 1.44% GES 67 1.44% SMT1/SMT2/SMT3 65 1.39% CODM/T6ODM 60 1.29% H6H 55 1.18% CSE 51 1.09% LAC 48 1.03% TAT 48 1.03% SGD 45 0.96% RAS 37 0.79% 7DLH 36 0.77% GS 35 0.75% CCR 31 0.66% HCT 31 0.66% CYP90D1 30 0.64% PYKS 29 0.62% F5H/CYP84A 29 0.62% BBE 27 0.58% T16H 26 0.56% CPD/CYP90A1 26 0.56% NCS 25 0.54% COMT 25 0.54% ANR 24 0.51% PMT 22 0.47% F3'5'H/CYP75A 22 0.47% IO 21 0.45% SLS 20 0.43% FPPS 19 0.41% BR6OX1/CYP85A1 18 0.39% ROT3/CYP90C1 17 0.36% G8O/G8H 16 0.34% 16OMT 16 0.34% FNS 16 0.34% SQS/FDFT1 16 0.34% CYP51G1 16 0.34% LAMT 15 0.32% DFR 15 0.32% COR 13 0.28% CNMT 12 0.26% PAL 12 0.26% CCoAOMT 12 0.26% CPR 11 0.24% 8HGO 10 0.21% DET2 10 0.21% GGPPS 10 0.21% MPO 9 0.19% TDC 9 0.19% TYDC_DDC 9 0.19% ANS/LDOX 9 0.19% CYP719 8 0.17% CHS 8 0.17% CYP80B1 7 0.15% ISY 7 0.15% HPPR 7 0.15% SQE 7 0.15% SMO1/SMO2 6 0.13% AACT 6 0.13% MVK 6 0.13% MVD 5 0.11% PMK 5 0.11% CHI 4 0.09% CPI1 4 0.09% DWF1 4 0.09% DXS 4 0.09% 6OMT_4OMT_SOMT 3 0.06% HYD1 3 0.06% DWF7 3 0.06% HMGR 3 0.06% HDR/IspH 3 0.06% HMGS 3 0.06% HDS/IspG 3 0.06% ADC 2 0.04% XMT_MXMT_DXMT 2 0.04% CYP80F1 2 0.04% ODC 2 0.04% MCT/IspD 2 0.04% IDI 2 0.04% CMK/IspE 2 0.04% FLS 1 0.02% FK 1 0.02% DWF5 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 562 19 BAHD (220) View species results
Alkaloid pathway 423 19 NMT (90) View species results
Phenylpropanoid pathway 404 11 POD (200) View species results
Flavonoid pathway 224 12 UFGT (148) View species results
Rosmarinic acid pathway 180 7 C4H (76) View species results
Steroid pathway 144 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1646 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 351 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
nicotiana_tomentosiformis_XP_009587990.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
nicotiana_tomentosiformis_XP_009587995.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
nicotiana_tomentosiformis_XP_009595905.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
nicotiana_tomentosiformis_XP_009602752.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
nicotiana_tomentosiformis_XP_009609749.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
nicotiana_tomentosiformis_XP_009621149.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
nicotiana_tomentosiformis_XP_009627345.2 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
nicotiana_tomentosiformis_XP_018626896.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
nicotiana_tomentosiformis_XP_018626897.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
nicotiana_tomentosiformis_XP_018630368.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
nicotiana_tomentosiformis_XP_018630369.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
nicotiana_tomentosiformis_XP_018632118.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
nicotiana_tomentosiformis_XP_033515704.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO