Nicotiana tomentosiformis (nicotiana_tomentosiformis)
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Imported from atlas release summary for Nicotiana tomentosiformis.
1937
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1937
Candidate Genes
BAHD
6.07%
C4H
5.94%
C3'H/CYP98A
5.29%
POD
4.48%
NMT
4.46%
4CL
3.99%
UFGT
3.75%
UGT
3.62%
Other Families
62.41%
More Families (97)
T3O
165
3.54%
7DLGT
160
3.43%
IFS
154
3.3%
CYP76
148
3.17%
F3H
126
2.7%
F3'H/CYP75B
100
2.14%
DWF4/CYP90B1
97
2.08%
STR
90
1.93%
BR6OX2/CYP85A2
84
1.8%
CYP71
80
1.71%
CAS
77
1.65%
TPS
75
1.61%
IFR
68
1.46%
CAD
68
1.46%
TRI/TRII
67
1.44%
GES
67
1.44%
SMT1/SMT2/SMT3
65
1.39%
CODM/T6ODM
60
1.29%
H6H
55
1.18%
CSE
51
1.09%
LAC
48
1.03%
TAT
48
1.03%
SGD
45
0.96%
RAS
37
0.79%
7DLH
36
0.77%
GS
35
0.75%
CCR
31
0.66%
HCT
31
0.66%
CYP90D1
30
0.64%
PYKS
29
0.62%
F5H/CYP84A
29
0.62%
BBE
27
0.58%
T16H
26
0.56%
CPD/CYP90A1
26
0.56%
NCS
25
0.54%
COMT
25
0.54%
ANR
24
0.51%
PMT
22
0.47%
F3'5'H/CYP75A
22
0.47%
IO
21
0.45%
SLS
20
0.43%
FPPS
19
0.41%
BR6OX1/CYP85A1
18
0.39%
ROT3/CYP90C1
17
0.36%
G8O/G8H
16
0.34%
16OMT
16
0.34%
FNS
16
0.34%
SQS/FDFT1
16
0.34%
CYP51G1
16
0.34%
LAMT
15
0.32%
DFR
15
0.32%
COR
13
0.28%
CNMT
12
0.26%
PAL
12
0.26%
CCoAOMT
12
0.26%
CPR
11
0.24%
8HGO
10
0.21%
DET2
10
0.21%
GGPPS
10
0.21%
MPO
9
0.19%
TDC
9
0.19%
TYDC_DDC
9
0.19%
ANS/LDOX
9
0.19%
CYP719
8
0.17%
CHS
8
0.17%
CYP80B1
7
0.15%
ISY
7
0.15%
HPPR
7
0.15%
SQE
7
0.15%
SMO1/SMO2
6
0.13%
AACT
6
0.13%
MVK
6
0.13%
MVD
5
0.11%
PMK
5
0.11%
CHI
4
0.09%
CPI1
4
0.09%
DWF1
4
0.09%
DXS
4
0.09%
6OMT_4OMT_SOMT
3
0.06%
HYD1
3
0.06%
DWF7
3
0.06%
HMGR
3
0.06%
HDR/IspH
3
0.06%
HMGS
3
0.06%
HDS/IspG
3
0.06%
ADC
2
0.04%
XMT_MXMT_DXMT
2
0.04%
CYP80F1
2
0.04%
ODC
2
0.04%
MCT/IspD
2
0.04%
IDI
2
0.04%
CMK/IspE
2
0.04%
FLS
1
0.02%
FK
1
0.02%
DWF5
1
0.02%
MDS/IspF
1
0.02%
DXR
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 562 | 19 | BAHD (220) | View species results |
| Alkaloid pathway | 423 | 19 | NMT (90) | View species results |
| Phenylpropanoid pathway | 404 | 11 | POD (200) | View species results |
| Flavonoid pathway | 224 | 12 | UFGT (148) | View species results |
| Rosmarinic acid pathway | 180 | 7 | C4H (76) | View species results |
| Steroid pathway | 144 | 11 | CAS (63) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1646 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 351 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| nicotiana_tomentosiformis_XP_018624120.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_018629422.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_018629978.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_018631697.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_018633410.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033508588.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033508589.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033508599.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00006__sp_Q9LM02_SMT1_ARATH |
| nicotiana_tomentosiformis_XP_033509036.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00004__sp_Q4VNK0_SMTA_BRAOT |
| nicotiana_tomentosiformis_XP_033510284.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033510300.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033511706.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033513450.1 | Steroid | SMT1/SMT2/SMT3 | low | borderline | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033514430.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |
| nicotiana_tomentosiformis_XP_033515101.1 | Steroid | SMT1/SMT2/SMT3 | medium | pass | SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH |