PlantSME Plant secondary metabolism enzyme database

Noteroclada confluens (noteroclada_confluens)

Imported from atlas release summary for Noteroclada confluens.

1374
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.95% Terpenoid pathway 24.53% Alkaloid pathway 17.61% Rosmarinic acid pathway 11.57% Flavonoid pathway 11.43% Steroid pathway 6.91%
Family Distribution
C4H 9.17% C3'H/CYP98A 6.57% CYP76 5.9% BAHD 5.11% POD 4.19% 4CL 3.93% IFS 3.42% STR 2.94%
Other Families 58.76%
More Families (96)
BR6OX2/CYP85A2 110 2.81% DWF4/CYP90B1 104 2.66% T3O 102 2.61% NMT 93 2.38% F3'H/CYP75B 89 2.27% F3H 84 2.15% G8O/G8H 73 1.87% CSE 73 1.87% UGT 72 1.84% H6H 64 1.64% F3'5'H/CYP75A 64 1.64% 7DLGT 61 1.56% IO 58 1.48% RAS 58 1.48% UFGT 57 1.46% HCT 54 1.38% IFR 53 1.35% SMT1/SMT2/SMT3 52 1.33% GS 50 1.28% T16H 45 1.15% CODM/T6ODM 40 1.02% TRI/TRII 36 0.92% PAL 33 0.84% CAD 32 0.82% CAS 30 0.77% PYKS 29 0.74% LAMT 28 0.72% LAC 28 0.72% COMT 23 0.59% CYP80B1 21 0.54% FNS 21 0.54% CPD/CYP90A1 21 0.54% 7DLH 20 0.51% NCS 20 0.51% ANS/LDOX 20 0.51% CHS 20 0.51% SLS 19 0.49% 8HGO 17 0.43% CYP90D1 17 0.43% BR6OX1/CYP85A1 17 0.43% CYP719 16 0.41% F5H/CYP84A 16 0.41% TPS 16 0.41% PMT 15 0.38% SGD 15 0.38% CCR 15 0.38% CNMT 14 0.36% COR 13 0.33% ANR 12 0.31% DFR 12 0.31% CYP71 12 0.31% SQS/FDFT1 11 0.28% FPPS 11 0.28% CPR 10 0.26% TAT 10 0.26% ROT3/CYP90C1 10 0.26% CYP51G1 10 0.26% AACT 10 0.26% GES 9 0.23% DET2 9 0.23% BBE 7 0.18% ISY 7 0.18% GGPPS 7 0.18% ADC 6 0.15% XMT_MXMT_DXMT 6 0.15% DWF1 6 0.15% SMO1/SMO2 6 0.15% HMGR 6 0.15% TDC 5 0.13% 16OMT 5 0.13% MPO 5 0.13% DWF5 5 0.13% MDS/IspF 5 0.13% DXR 5 0.13% MCT/IspD 5 0.13% DXS 5 0.13% CYP80F1 4 0.1% CHI 4 0.1% CCoAOMT 4 0.1% MVK 4 0.1% TYDC_DDC 3 0.08% 6OMT_4OMT_SOMT 3 0.08% FLS 3 0.08% HYD1 3 0.08% CMK/IspE 3 0.08% MVD 3 0.08% HMGS 3 0.08% PMK 3 0.08% ODC 2 0.05% HPPR 2 0.05% SQE 2 0.05% DWF7 2 0.05% HDS/IspG 2 0.05% IDI 2 0.05% HDR/IspH 2 0.05% CPI1 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 384 13 POD (152) View species results
Terpenoid pathway 337 20 BAHD (116) View species results
Alkaloid pathway 242 20 NMT (36) View species results
Rosmarinic acid pathway 159 7 C4H (86) View species results
Flavonoid pathway 157 13 UFGT (56) View species results
Steroid pathway 95 15 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1809 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 312 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
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Gene Pathway Family Confidence Status Best Target
Ncon17094800488680 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17094800488690 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17095310488920 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17098630490980 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17102780493220 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17103900493780 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17104650494240 Alkaloid STR medium pass STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17109240496590 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17115820498800 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17232800499590 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17232810499600 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17239460499660 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon17239480499670 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon8037620506910 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR
Ncon8149360507240 Alkaloid STR low borderline STR__00001__sp_D3GE74_STR1_MEDTR