PlantSME Plant secondary metabolism enzyme database

Nymphaea colorata (nymphaea_colorata)

Imported from atlas release summary for Nymphaea colorata.

1910
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Current group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Basal angiosperms
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.63% Alkaloid pathway 20.79% Phenylpropanoid pathway 20.73% Flavonoid pathway 11.88% Rosmarinic acid pathway 8.69% Steroid pathway 7.28%
Family Distribution
BAHD 7.08% C3'H/CYP98A 5.61% C4H 5.3% 4CL 4.69% POD 4.29% CYP76 4.26% UFGT 3.88% NMT 3.74%
Other Families 61.15%
More Families (95)
IFS 155 3.67% UGT 153 3.62% 7DLGT 146 3.46% T3O 143 3.39% DWF4/CYP90B1 83 1.96% BR6OX2/CYP85A2 79 1.87% F3'H/CYP75B 76 1.8% F3H 75 1.78% STR 73 1.73% CAS 73 1.73% TPS 69 1.63% GES 67 1.59% SMT1/SMT2/SMT3 59 1.4% LAC 49 1.16% TRI/TRII 48 1.14% IFR 47 1.11% GS 45 1.07% CAD 44 1.04% CPD/CYP90A1 43 1.02% CYP71 41 0.97% RAS 40 0.95% COMT 39 0.92% CODM/T6ODM 38 0.9% CSE 37 0.88% CCR 34 0.8% CYP51G1 33 0.78% H6H 32 0.76% PYKS 32 0.76% SGD 32 0.76% 8HGO 31 0.73% ANR 30 0.71% 16OMT 29 0.69% SLS 29 0.69% HCT 28 0.66% T16H 27 0.64% IO 25 0.59% 7DLH 24 0.57% ADC 22 0.52% F3'5'H/CYP75A 21 0.5% PMT 20 0.47% G8O/G8H 17 0.4% CYP90D1 17 0.4% F5H/CYP84A 16 0.38% DET2 16 0.38% PAL 15 0.36% HPPR 15 0.36% GGPPS 15 0.36% NCS 14 0.33% FNS 14 0.33% CHS 13 0.31% SQS/FDFT1 13 0.31% AACT 13 0.31% TYDC_DDC 11 0.26% CYP80B1 11 0.26% COR 11 0.26% CCoAOMT 11 0.26% CHI 10 0.24% CPR 10 0.24% DWF7 10 0.24% LAMT 9 0.21% ANS/LDOX 9 0.21% DFR 9 0.21% SMO1/SMO2 9 0.21% CNMT 8 0.19% CYP719 8 0.19% TAT 8 0.19% BR6OX1/CYP85A1 7 0.17% ROT3/CYP90C1 7 0.17% MVK 7 0.17% FPPS 7 0.17% MCT/IspD 7 0.17% 6OMT_4OMT_SOMT 6 0.14% DXS 6 0.14% TDC 5 0.12% BBE 4 0.09% DWF1 4 0.09% MDS/IspF 4 0.09% MPO 3 0.07% ISY 3 0.07% HMGR 3 0.07% MVD 3 0.07% HMGS 3 0.07% SQE 2 0.05% HYD1 2 0.05% FK 2 0.05% CMK/IspE 2 0.05% IDI 2 0.05% HDR/IspH 2 0.05% HDS/IspG 2 0.05% PMK 2 0.05% ODC 1 0.02% XMT_MXMT_DXMT 1 0.02% CPI1 1 0.02% DWF5 1 0.02% DXR 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 585 19 BAHD (239) View species results
Alkaloid pathway 397 19 7DLGT (77) View species results
Phenylpropanoid pathway 396 13 POD (173) View species results
Flavonoid pathway 227 9 UFGT (141) View species results
Rosmarinic acid pathway 166 7 C4H (85) View species results
Steroid pathway 139 11 CAS (66) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1503 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 367 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP90D1
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Gene Pathway Family Confidence Status
NcolGWHAAYW000000040082330.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000050095240.1 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000060113440.2 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000060116910.1 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000060118900.1 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000060118900.3 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000060118900.4 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000060120700.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000060120710.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000060120720.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000060120730.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000070126110.1 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000090155100.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000090156450.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000090156460.1 Steroid CYP90D1 low borderline
NcolGWHAAYW000000110186060.1 Steroid CYP90D1 medium borderline
NcolGWHAAYW000000110186060.2 Steroid CYP90D1 medium borderline