PlantSME Plant secondary metabolism enzyme database

Nyssa yunnanensis (nyssa_yunnanensis)

Imported from atlas release summary for Nyssa yunnanensis.

2160
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.55% Alkaloid pathway 23.38% Phenylpropanoid pathway 17.92% Flavonoid pathway 12.31% Rosmarinic acid pathway 6.94% Steroid pathway 6.9%
Family Distribution
C4H 6.19% UGT 5.62% BAHD 5.43% C3'H/CYP98A 5.01% 7DLGT 4.67% UFGT 3.9% POD 3.79% CYP76 3.77%
Other Families 61.61%
More Families (97)
IFS 176 3.71% 4CL 153 3.22% F3H 139 2.93% T3O 131 2.76% NMT 91 1.92% DWF4/CYP90B1 90 1.9% F3'H/CYP75B 83 1.75% CAS 83 1.75% CAD 78 1.64% CODM/T6ODM 77 1.62% TPS 76 1.6% STR 74 1.56% H6H 71 1.5% CYP71 67 1.41% GES 64 1.35% BR6OX2/CYP85A2 64 1.35% SGD 59 1.24% SMT1/SMT2/SMT3 59 1.24% G8O/G8H 58 1.22% LAC 54 1.14% TRI/TRII 49 1.03% CYP90D1 46 0.97% IO 45 0.95% GS 45 0.95% IFR 45 0.95% T16H 44 0.93% PYKS 39 0.82% CSE 39 0.82% F3'5'H/CYP75A 36 0.76% F5H/CYP84A 35 0.74% HCT 34 0.72% FNS 32 0.67% TAT 31 0.65% BR6OX1/CYP85A1 27 0.57% SQE 26 0.55% RAS 25 0.53% 7DLH 24 0.51% PAL 24 0.51% CCR 23 0.48% CPD/CYP90A1 23 0.48% PMT 22 0.46% DFR 21 0.44% SLS 20 0.42% COMT 20 0.42% COR 19 0.4% MPO 19 0.4% 8HGO 19 0.4% BBE 19 0.4% ANR 19 0.4% NCS 17 0.36% CYP51G1 17 0.36% AACT 14 0.29% FPPS 13 0.27% GPPS 13 0.27% LAMT 11 0.23% 16OMT 11 0.23% CHS 11 0.23% CYP719 10 0.21% ISY 10 0.21% XMT_MXMT_DXMT 10 0.21% ANS/LDOX 10 0.21% SQS/FDFT1 9 0.19% GGPPS 9 0.19% TYDC_DDC 8 0.17% CCoAOMT 8 0.17% ROT3/CYP90C1 8 0.17% SMO1/SMO2 8 0.17% DXS 8 0.17% CYP80B1 7 0.15% CPR 7 0.15% CNMT 6 0.13% MCT/IspD 6 0.13% MVK 6 0.13% CHI 5 0.11% HPPR 5 0.11% DWF7 5 0.11% IDI 5 0.11% CYP80F1 4 0.08% 6OMT_4OMT_SOMT 4 0.08% FLS 4 0.08% HMGR 4 0.08% ODC 3 0.06% ADC 3 0.06% DET2 3 0.06% MVD 3 0.06% PMK 3 0.06% HDS/IspG 3 0.06% HMGS 3 0.06% CMK/IspE 3 0.06% TDC 2 0.04% CPI1 2 0.04% HYD1 2 0.04% DWF5 2 0.04% DWF1 1 0.02% MDS/IspF 1 0.02% DXR 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 703 19 UGT (255) View species results
Alkaloid pathway 505 23 7DLGT (101) View species results
Phenylpropanoid pathway 387 12 POD (168) View species results
Flavonoid pathway 266 14 UFGT (162) View species results
Rosmarinic acid pathway 150 7 C4H (61) View species results
Steroid pathway 149 12 CAS (65) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1726 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 317 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP719
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Gene Pathway Family Confidence Status Best Target
nyssa_yunnanensis_augustus-125-processed-gene-6.0-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
nyssa_yunnanensis_augustus-286830-processed-gene-0.0-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE
nyssa_yunnanensis_augustus-291135-processed-gene-6.7-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
nyssa_yunnanensis_augustus-291161-processed-gene-13.4-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
nyssa_yunnanensis_augustus-291268-processed-gene-16.6-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
nyssa_yunnanensis_augustus-292270-processed-gene-0.0-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00005__sp_B5UAQ8_C7195_ESCCA
nyssa_yunnanensis_augustus-296-processed-gene-13.4-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00003__sp_B1NF19_C719D_ARGME
nyssa_yunnanensis_maker-209-augustus-gene-6.12-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00002__sp_B1NF18_C719B_PAPSO
nyssa_yunnanensis_maker-652-augustus-gene-25.7-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00001__sp_A0A7T9QPT0_C719A_PIPNI
nyssa_yunnanensis_maker-925-augustus-gene-4.22-mRNA-1 Alkaloid CYP719 medium borderline CYP719__00007__sp_L7T720_C719A_PODPE