PlantSME Plant secondary metabolism enzyme database

Ochroma pyramidale (ochroma_pyramidale)

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Imported from atlas release summary for Ochroma pyramidale.

2074
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.68% Phenylpropanoid pathway 24.45% Alkaloid pathway 23.77% Flavonoid pathway 10.85% Rosmarinic acid pathway 7.47% Steroid pathway 5.79%
Family Distribution
C4H 5.89% BAHD 5.72% C3'H/CYP98A 5.7% POD 4.03% 4CL 3.86% CYP76 3.8% F3H 3.61% T3O 3.45%
Other Families 63.95%
More Families (97)
IFS 177 3.4% UGT 160 3.07% 7DLGT 127 2.44% UFGT 125 2.4% NMT 121 2.32% STR 112 2.15% CAD 112 2.15% F3'H/CYP75B 107 2.05% DWF4/CYP90B1 104 2.0% CODM/T6ODM 101 1.94% BR6OX2/CYP85A2 94 1.8% H6H 87 1.67% LAC 83 1.59% CYP71 79 1.52% GS 73 1.4% CAS 65 1.25% SMT1/SMT2/SMT3 63 1.21% IFR 57 1.09% TPS 55 1.06% CYP90D1 53 1.02% PYKS 51 0.98% GES 49 0.94% TRI/TRII 48 0.92% CSE 47 0.9% HCT 47 0.9% RAS 44 0.84% T16H 43 0.83% G8O/G8H 42 0.81% BBE 41 0.79% F5H/CYP84A 40 0.77% PAL 39 0.75% COMT 38 0.73% PMT 37 0.71% F3'5'H/CYP75A 37 0.71% FNS 35 0.67% IO 34 0.65% NCS 34 0.65% SGD 31 0.59% BR6OX1/CYP85A1 31 0.59% 7DLH 30 0.58% COR 27 0.52% CCR 27 0.52% CPD/CYP90A1 27 0.52% ANR 26 0.5% 16OMT 22 0.42% TAT 22 0.42% 8HGO 21 0.4% DFR 21 0.4% CHS 21 0.4% SLS 20 0.38% ROT3/CYP90C1 19 0.36% LAMT 18 0.35% ANS/LDOX 18 0.35% CYP51G1 18 0.35% CYP719 17 0.33% MPO 17 0.33% CNMT 15 0.29% CPR 15 0.29% CCoAOMT 14 0.27% FPPS 13 0.25% HMGR 11 0.21% AACT 10 0.19% DXS 10 0.19% GGPPS 10 0.19% SQS/FDFT1 9 0.17% SMO1/SMO2 9 0.17% MVD 9 0.17% SQE 8 0.15% CHI 7 0.13% HPPR 7 0.13% MVK 7 0.13% CYP80B1 6 0.12% ISY 6 0.12% ODC 5 0.1% ADC 5 0.1% TDC 5 0.1% FK 5 0.1% DET2 5 0.1% 6OMT_4OMT_SOMT 4 0.08% MDS/IspF 4 0.08% HMGS 4 0.08% XMT_MXMT_DXMT 3 0.06% DWF1 3 0.06% MCT/IspD 3 0.06% PMK 3 0.06% GPPS 3 0.06% HDR/IspH 3 0.06% DXR 3 0.06% TYDC_DDC 2 0.04% CPI1 2 0.04% DWF7 2 0.04% IDI 2 0.04% HDS/IspG 2 0.04% CMK/IspE 2 0.04% FLS 1 0.02% DWF5 1 0.02% HYD1 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 574 21 BAHD (232) View species results
Phenylpropanoid pathway 507 13 POD (184) View species results
Alkaloid pathway 493 22 NMT (64) View species results
Flavonoid pathway 225 10 UFGT (110) View species results
Rosmarinic acid pathway 155 7 C4H (53) View species results
Steroid pathway 120 11 CAS (54) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1960 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 389 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TPS
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Gene Pathway Family Confidence Status Best Target
ochroma_pyramidale_OCHPYR34015_OCHPYR Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO
ochroma_pyramidale_OCHPYR44325_OCHPYR Terpenoid TPS medium pass TPS__00040__sp_A0A348AUV6_TPS1B_CAMHI
ochroma_pyramidale_OCHPYR44328_OCHPYR Terpenoid TPS medium pass TPS__00110__sp_G0Y7D1_TPS1_LITCU
ochroma_pyramidale_OCHPYR44513_OCHPYR Terpenoid TPS medium pass TPS__00020__sp_A0A1V0QSF6_TS7FN_CANSA
ochroma_pyramidale_OCHPYR44514_OCHPYR Terpenoid TPS medium pass TPS__00060__sp_B9S9Z3_TPS1_RICCO