Ophiorrhiza pumila (ophiorrhiza_pumila)
Imported from atlas release summary for Ophiorrhiza pumila.
1654
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1654
Candidate Genes
C4H
7.46%
C3'H/CYP98A
6.89%
BAHD
5.3%
T3O
4.25%
IFS
4.08%
UGT
3.9%
CYP76
3.62%
7DLGT
3.53%
Other Families
60.95%
More Families (95)
UFGT
154
3.36%
F3'H/CYP75B
134
2.92%
POD
129
2.81%
BR6OX2/CYP85A2
113
2.47%
CYP71
109
2.38%
4CL
105
2.29%
DWF4/CYP90B1
105
2.29%
F3H
99
2.16%
STR
98
2.14%
NMT
80
1.75%
SMT1/SMT2/SMT3
78
1.7%
SGD
66
1.44%
BBE
64
1.4%
CAD
63
1.37%
H6H
60
1.31%
CODM/T6ODM
59
1.29%
TRI/TRII
55
1.2%
CYP90D1
54
1.18%
CAS
53
1.16%
TAT
50
1.09%
T16H
47
1.03%
COMT
44
0.96%
G8O/G8H
41
0.89%
HCT
40
0.87%
GS
39
0.85%
GES
39
0.85%
TPS
39
0.85%
7DLH
37
0.81%
CSE
37
0.81%
IO
36
0.79%
SLS
35
0.76%
LAC
29
0.63%
F5H/CYP84A
29
0.63%
CYP51G1
28
0.61%
FNS
26
0.57%
IFR
26
0.57%
F3'5'H/CYP75A
25
0.55%
RAS
24
0.52%
NCS
23
0.5%
LAMT
23
0.5%
CPD/CYP90A1
23
0.5%
PYKS
22
0.48%
PMT
20
0.44%
16OMT
20
0.44%
ANR
19
0.41%
ANS/LDOX
15
0.33%
AACT
14
0.31%
DXR
14
0.31%
FPPS
14
0.31%
CNMT
13
0.28%
CCR
13
0.28%
COR
12
0.26%
PAL
12
0.26%
CPR
12
0.26%
BR6OX1/CYP85A1
12
0.26%
8HGO
11
0.24%
ROT3/CYP90C1
10
0.22%
FLS
9
0.2%
CCoAOMT
8
0.17%
TYDC_DDC
7
0.15%
DET2
7
0.15%
SQE
7
0.15%
MPO
6
0.13%
CYP80B1
6
0.13%
XMT_MXMT_DXMT
6
0.13%
DWF5
6
0.13%
CYP719
5
0.11%
DFR
5
0.11%
SMO1/SMO2
5
0.11%
MVK
5
0.11%
GGPPS
5
0.11%
HPPR
4
0.09%
SQS/FDFT1
4
0.09%
HMGR
4
0.09%
DXS
4
0.09%
HMGS
4
0.09%
ISY
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
CHI
3
0.07%
CHS
3
0.07%
CMK/IspE
3
0.07%
MVD
3
0.07%
CPI1
2
0.04%
FK
2
0.04%
HDS/IspG
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
ADC
1
0.02%
TDC
1
0.02%
HYD1
1
0.02%
DWF7
1
0.02%
GPPS
1
0.02%
HDR/IspH
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 503 | 19 | BAHD (190) | View species results |
| Alkaloid pathway | 402 | 24 | 7DLGT (62) | View species results |
| Phenylpropanoid pathway | 293 | 11 | POD (112) | View species results |
| Flavonoid pathway | 203 | 13 | UFGT (146) | View species results |
| Rosmarinic acid pathway | 137 | 7 | C4H (56) | View species results |
| Steroid pathway | 116 | 12 | SMT1/SMT2/SMT3 (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2055 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 307 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Opum08G0006330.1 | Alkaloid | NMT | medium | borderline | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Opum08G0013250.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Opum08G0013260.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| Opum08G0013980.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Opum08G0020560.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Opum08G0021080.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Opum08G0021880.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Opum08G0024090.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Opum09G0001210.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Opum09G0001560.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Opum09G0015490.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| Opum09G0032020.1 | Alkaloid | NMT | low | borderline | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Opum10G0000060.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Opum10G0001100.1 | Alkaloid | NMT | medium | borderline | NMT__00015__sp_C8YTM5_PEAM2_WHEAT |
| Opum10G0008580.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| Opum10G0009090.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Opum10G0017420.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Opum10G0017740.1 | Alkaloid | NMT | medium | pass | NMT__00009__sp_A0AA51VIL7_NMT1_LOPWI |
| Opum10G0018450.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Opum10G0018750.1 | Alkaloid | NMT | medium | pass | NMT__00001__sp_A0A075D654_ANMT_RAUSE |
| Opum10G0018760.1 | Alkaloid | NMT | medium | pass | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Opum10G0018770.1 | Alkaloid | NMT | medium | pass | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Opum10G0018820.1 | Alkaloid | NMT | medium | borderline | NMT__00001__sp_A0A075D654_ANMT_RAUSE |
| Opum11G0000040.1 | Alkaloid | NMT | medium | borderline | NMT__00002__sp_A0A075D6M1_NNMT_RAUSE |
| Opum11G0016780.1 | Alkaloid | NMT | low | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| Opum11G0016790.1 | Alkaloid | NMT | medium | pass | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Opum11G0016870.1 | Alkaloid | NMT | medium | pass | NMT__00050__sp_Q944H0_PEAM2_ARATH |
| Opum11G0020750.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Opum11G0024200.1 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| Opum11G0026500.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |