PlantSME Plant secondary metabolism enzyme database

Ophiorrhiza pumila (ophiorrhiza_pumila)

Imported from atlas release summary for Ophiorrhiza pumila.

1654
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.41% Alkaloid pathway 24.3% Phenylpropanoid pathway 17.71% Flavonoid pathway 12.27% Rosmarinic acid pathway 8.28% Steroid pathway 7.01%
Family Distribution
C4H 7.46% C3'H/CYP98A 6.89% BAHD 5.3% T3O 4.25% IFS 4.08% UGT 3.9% CYP76 3.62% 7DLGT 3.53%
Other Families 60.95%
More Families (95)
UFGT 154 3.36% F3'H/CYP75B 134 2.92% POD 129 2.81% BR6OX2/CYP85A2 113 2.47% CYP71 109 2.38% 4CL 105 2.29% DWF4/CYP90B1 105 2.29% F3H 99 2.16% STR 98 2.14% NMT 80 1.75% SMT1/SMT2/SMT3 78 1.7% SGD 66 1.44% BBE 64 1.4% CAD 63 1.37% H6H 60 1.31% CODM/T6ODM 59 1.29% TRI/TRII 55 1.2% CYP90D1 54 1.18% CAS 53 1.16% TAT 50 1.09% T16H 47 1.03% COMT 44 0.96% G8O/G8H 41 0.89% HCT 40 0.87% GS 39 0.85% GES 39 0.85% TPS 39 0.85% 7DLH 37 0.81% CSE 37 0.81% IO 36 0.79% SLS 35 0.76% LAC 29 0.63% F5H/CYP84A 29 0.63% CYP51G1 28 0.61% FNS 26 0.57% IFR 26 0.57% F3'5'H/CYP75A 25 0.55% RAS 24 0.52% NCS 23 0.5% LAMT 23 0.5% CPD/CYP90A1 23 0.5% PYKS 22 0.48% PMT 20 0.44% 16OMT 20 0.44% ANR 19 0.41% ANS/LDOX 15 0.33% AACT 14 0.31% DXR 14 0.31% FPPS 14 0.31% CNMT 13 0.28% CCR 13 0.28% COR 12 0.26% PAL 12 0.26% CPR 12 0.26% BR6OX1/CYP85A1 12 0.26% 8HGO 11 0.24% ROT3/CYP90C1 10 0.22% FLS 9 0.2% CCoAOMT 8 0.17% TYDC_DDC 7 0.15% DET2 7 0.15% SQE 7 0.15% MPO 6 0.13% CYP80B1 6 0.13% XMT_MXMT_DXMT 6 0.13% DWF5 6 0.13% CYP719 5 0.11% DFR 5 0.11% SMO1/SMO2 5 0.11% MVK 5 0.11% GGPPS 5 0.11% HPPR 4 0.09% SQS/FDFT1 4 0.09% HMGR 4 0.09% DXS 4 0.09% HMGS 4 0.09% ISY 3 0.07% 6OMT_4OMT_SOMT 3 0.07% CHI 3 0.07% CHS 3 0.07% CMK/IspE 3 0.07% MVD 3 0.07% CPI1 2 0.04% FK 2 0.04% HDS/IspG 2 0.04% MCT/IspD 2 0.04% PMK 2 0.04% ADC 1 0.02% TDC 1 0.02% HYD1 1 0.02% DWF7 1 0.02% GPPS 1 0.02% HDR/IspH 1 0.02% IDI 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 503 19 BAHD (190) View species results
Alkaloid pathway 402 24 7DLGT (62) View species results
Phenylpropanoid pathway 293 11 POD (112) View species results
Flavonoid pathway 203 13 UFGT (146) View species results
Rosmarinic acid pathway 137 7 C4H (56) View species results
Steroid pathway 116 12 SMT1/SMT2/SMT3 (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 2055 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 307 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Opum01G0005870.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Opum01G0006800.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Opum01G0024000.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Opum05G0003470.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Opum05G0004920.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Opum05G0004940.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Opum11G0004270.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO