Ophiorrhiza pumila (ophiorrhiza_pumila)
Imported from atlas release summary for Ophiorrhiza pumila.
2062
Candidate Protein Records
1654
Pathway-Level Records
4584
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4584
Family-Level Calls
C4H
7.46%
C3'H/CYP98A
6.89%
BAHD
5.3%
T3O
4.25%
IFS
4.08%
UGT
3.9%
CYP76
3.62%
7DLGT
3.53%
Other Families
60.95%
More Families (95)
UFGT
154
3.36%
F3'H/CYP75B
134
2.92%
POD
129
2.81%
BR6OX2/CYP85A2
113
2.47%
CYP71
109
2.38%
4CL
105
2.29%
DWF4/CYP90B1
105
2.29%
F3H
99
2.16%
STR
98
2.14%
NMT
80
1.75%
SMT1/SMT2/SMT3
78
1.7%
SGD
66
1.44%
BBE
64
1.4%
CAD
63
1.37%
H6H
60
1.31%
CODM/T6ODM
59
1.29%
TRI/TRII
55
1.2%
CYP90D1
54
1.18%
CAS
53
1.16%
TAT
50
1.09%
T16H
47
1.03%
COMT
44
0.96%
G8O/G8H
41
0.89%
HCT
40
0.87%
GS
39
0.85%
GES
39
0.85%
TPS
39
0.85%
7DLH
37
0.81%
CSE
37
0.81%
IO
36
0.79%
SLS
35
0.76%
LAC
29
0.63%
F5H/CYP84A
29
0.63%
CYP51G1
28
0.61%
FNS
26
0.57%
IFR
26
0.57%
F3'5'H/CYP75A
25
0.55%
RAS
24
0.52%
NCS
23
0.5%
LAMT
23
0.5%
CPD/CYP90A1
23
0.5%
PYKS
22
0.48%
PMT
20
0.44%
16OMT
20
0.44%
ANR
19
0.41%
ANS/LDOX
15
0.33%
AACT
14
0.31%
DXR
14
0.31%
FPPS
14
0.31%
CNMT
13
0.28%
CCR
13
0.28%
COR
12
0.26%
PAL
12
0.26%
CPR
12
0.26%
BR6OX1/CYP85A1
12
0.26%
8HGO
11
0.24%
ROT3/CYP90C1
10
0.22%
FLS
9
0.2%
CCoAOMT
8
0.17%
TYDC_DDC
7
0.15%
DET2
7
0.15%
SQE
7
0.15%
MPO
6
0.13%
CYP80B1
6
0.13%
XMT_MXMT_DXMT
6
0.13%
DWF5
6
0.13%
CYP719
5
0.11%
DFR
5
0.11%
SMO1/SMO2
5
0.11%
MVK
5
0.11%
GGPPS
5
0.11%
HPPR
4
0.09%
SQS/FDFT1
4
0.09%
HMGR
4
0.09%
DXS
4
0.09%
HMGS
4
0.09%
ISY
3
0.07%
6OMT_4OMT_SOMT
3
0.07%
CHI
3
0.07%
CHS
3
0.07%
CMK/IspE
3
0.07%
MVD
3
0.07%
CPI1
2
0.04%
FK
2
0.04%
HDS/IspG
2
0.04%
MCT/IspD
2
0.04%
PMK
2
0.04%
ADC
1
0.02%
TDC
1
0.02%
HYD1
1
0.02%
DWF7
1
0.02%
GPPS
1
0.02%
HDR/IspH
1
0.02%
IDI
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 503 | 19 | BAHD (190) | View species results |
| Alkaloid pathway | 402 | 24 | 7DLGT (62) | View species results |
| Phenylpropanoid pathway | 293 | 11 | POD (112) | View species results |
| Flavonoid pathway | 203 | 13 | UFGT (146) | View species results |
| Rosmarinic acid pathway | 137 | 7 | C4H (56) | View species results |
| Steroid pathway | 116 | 12 | SMT1/SMT2/SMT3 (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 2055 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 307 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Opum06G0030700.1 | Alkaloid | PMT | low | borderline |
| Opum06G0030710.1 | Alkaloid | PMT | low | borderline |
| Opum06G0030720.1 | Alkaloid | PMT | low | borderline |
| Opum07G0009910.1 | Alkaloid | PMT | medium | pass |
| Opum08G0001280.1 | Alkaloid | PMT | medium | pass |
| Opum08G0006420.1 | Alkaloid | PMT | low | borderline |
| Opum08G0016050.1 | Alkaloid | PMT | low | borderline |
| Opum08G0023880.1 | Alkaloid | PMT | low | borderline |
| Opum09G0001650.1 | Alkaloid | PMT | medium | borderline |
| Opum09G0006250.1 | Alkaloid | PMT | low | borderline |
| Opum09G0006330.1 | Alkaloid | PMT | low | borderline |
| Opum10G0002410.1 | Alkaloid | PMT | low | borderline |
| Opum11G0026010.1 | Alkaloid | PMT | medium | borderline |
| Opum01G0004120.1 | Alkaloid | PYKS | low | borderline |
| Opum02G0004470.1 | Alkaloid | PYKS | high | pass |
| Opum02G0009230.1 | Alkaloid | PYKS | low | borderline |
| Opum02G0026710.1 | Alkaloid | PYKS | low | borderline |
| Opum02G0031320.1 | Alkaloid | PYKS | low | borderline |
| Opum02G0032170.1 | Alkaloid | PYKS | high | pass |
| Opum03G0004420.1 | Alkaloid | PYKS | low | borderline |
| Opum03G0004550.1 | Alkaloid | PYKS | low | borderline |
| Opum03G0004560.1 | Alkaloid | PYKS | low | borderline |
| Opum03G0004570.1 | Alkaloid | PYKS | low | borderline |
| Opum03G0004580.1 | Alkaloid | PYKS | low | borderline |
| Opum03G0007720.1 | Alkaloid | PYKS | high | pass |
| Opum06G0004120.1 | Alkaloid | PYKS | low | borderline |
| Opum06G0029360.1 | Alkaloid | PYKS | low | borderline |
| Opum06G0031940.1 | Alkaloid | PYKS | low | borderline |
| Opum07G0028080.1 | Alkaloid | PYKS | low | borderline |
| Opum08G0004770.1 | Alkaloid | PYKS | low | borderline |
| Opum08G0005150.1 | Alkaloid | PYKS | low | borderline |
| Opum10G0002730.1 | Alkaloid | PYKS | low | borderline |
| Opum10G0006680.1 | Alkaloid | PYKS | low | borderline |
| Opum11G0000150.1 | Alkaloid | PYKS | low | borderline |
| Opum11G0017380.1 | Alkaloid | PYKS | low | borderline |
| Opum01G0006160.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006210.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006220.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006230.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006760.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006780.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006790.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006810.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006830.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006850.1 | Alkaloid | SGD | medium | pass |
| Opum01G0006890.1 | Alkaloid | SGD | low | borderline |
| Opum01G0006900.1 | Alkaloid | SGD | medium | pass |
| Opum01G0007030.1 | Alkaloid | SGD | medium | pass |
| Opum01G0007050.1 | Alkaloid | SGD | medium | pass |
| Opum01G0007070.1 | Alkaloid | SGD | medium | pass |