PlantSME Plant secondary metabolism enzyme database

Oropetium thomaeum (oropetium_thomaeum)

Imported from atlas release summary for Oropetium thomaeum.

883
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.43% Alkaloid pathway 23.33% Phenylpropanoid pathway 20.27% Flavonoid pathway 15.4% Steroid pathway 7.02% Rosmarinic acid pathway 5.55%
Family Distribution
BAHD 8.41% 4CL 6.05% POD 6.05% UGT 5.46% 7DLGT 4.92% UFGT 4.67% NMT 3.2% F3H 2.85%
Other Families 58.39%
More Families (95)
C3'H/CYP98A 58 2.85% C4H 51 2.51% STR 43 2.12% H6H 38 1.87% IFS 38 1.87% SMT1/SMT2/SMT3 36 1.77% LAC 32 1.57% T3O 31 1.52% PMT 30 1.48% IFR 30 1.48% CODM/T6ODM 29 1.43% CAS 29 1.43% PYKS 28 1.38% CAD 27 1.33% TRI/TRII 26 1.28% CCR 26 1.28% NCS 23 1.13% RAS 22 1.08% HCT 21 1.03% COMT 21 1.03% CYP76 21 1.03% SGD 20 0.98% SLS 19 0.93% BR6OX2/CYP85A2 19 0.93% GS 18 0.89% 16OMT 17 0.84% DFR 17 0.84% F3'H/CYP75B 16 0.79% FNS 16 0.79% ANR 16 0.79% DWF4/CYP90B1 16 0.79% 7DLH 15 0.74% BBE 15 0.74% TPS 14 0.69% IO 13 0.64% CHS 13 0.64% G8O/G8H 12 0.59% ANS/LDOX 12 0.59% COR 11 0.54% CPR 11 0.54% CYP90D1 11 0.54% CYP71 11 0.54% 8HGO 10 0.49% GES 10 0.49% BR6OX1/CYP85A1 10 0.49% CNMT 9 0.44% GGPPS 9 0.44% T16H 8 0.39% F3'5'H/CYP75A 8 0.39% TAT 8 0.39% CPD/CYP90A1 8 0.39% FPPS 8 0.39% CSE 7 0.34% AACT 7 0.34% CYP51G1 6 0.3% MPO 5 0.25% CHI 5 0.25% CCoAOMT 5 0.25% HPPR 5 0.25% HMGR 5 0.25% DXS 5 0.25% TYDC_DDC 4 0.2% XMT_MXMT_DXMT 4 0.2% LAMT 4 0.2% SMO1/SMO2 4 0.2% ROT3/CYP90C1 4 0.2% SQS/FDFT1 4 0.2% HYD1 4 0.2% DET2 4 0.2% MVK 4 0.2% TDC 3 0.15% F5H/CYP84A 3 0.15% MCT/IspD 3 0.15% IDI 3 0.15% MDS/IspF 3 0.15% 6OMT_4OMT_SOMT 2 0.1% ISY 2 0.1% FLS 2 0.1% PMK 2 0.1% MVD 2 0.1% HMGS 2 0.1% CYP719 1 0.05% ODC 1 0.05% CYP80B1 1 0.05% ADC 1 0.05% SQE 1 0.05% FK 1 0.05% DWF7 1 0.05% CPI1 1 0.05% DWF5 1 0.05% DWF1 1 0.05% HDS/IspG 1 0.05% DXR 1 0.05% HDR/IspH 1 0.05% CMK/IspE 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 251 20 BAHD (117) View species results
Alkaloid pathway 206 22 7DLGT (38) View species results
Phenylpropanoid pathway 179 11 POD (96) View species results
Flavonoid pathway 136 11 UFGT (83) View species results
Steroid pathway 62 14 CAS (23) View species results
Rosmarinic acid pathway 49 6 4CL (20) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 380 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 214 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Oropetium_20150105_22670A Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Oropetium_20150105_23260A Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
Oropetium_20150105_23261A Alkaloid NMT medium pass NMT__00020__sp_O23372_ATXR3_ARATH
Oropetium_20150105_23426A Alkaloid NMT low borderline NMT__00051__sp_Q96565_AMNMT_HORVV
Oropetium_20150105_24043A Alkaloid NMT medium pass NMT__00034__sp_Q5VN06_CLF_ORYSJ
Oropetium_20150105_24942A Alkaloid NMT low borderline NMT__00048__sp_Q8W595_SUVR4_ARATH
Oropetium_20150105_24949A Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Oropetium_20150105_24951A Alkaloid NMT medium pass NMT__00060__sp_Q9MAT5_ANM10_ARATH
Oropetium_20150105_25119A Alkaloid NMT medium pass NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Oropetium_20150105_26190A Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Oropetium_20150105_26485A Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Oropetium_20150105_26617A Alkaloid NMT medium borderline NMT__00065__sp_Q9SEH7_PMT2_TOBAC
Oropetium_20150105_26629A Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Oropetium_20150105_26907A Alkaloid NMT medium pass NMT__00019__sp_O22781_SUVH2_ARATH
Oropetium_20150105_26908A Alkaloid NMT medium pass NMT__00067__sp_Q9T0G7_SUVH9_ARATH