Oropetium thomaeum (oropetium_thomaeum)
Imported from atlas release summary for Oropetium thomaeum.
883
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
883
Candidate Genes
BAHD
8.41%
4CL
6.05%
POD
6.05%
UGT
5.46%
7DLGT
4.92%
UFGT
4.67%
NMT
3.2%
F3H
2.85%
Other Families
58.39%
More Families (95)
C3'H/CYP98A
58
2.85%
C4H
51
2.51%
STR
43
2.12%
H6H
38
1.87%
IFS
38
1.87%
SMT1/SMT2/SMT3
36
1.77%
LAC
32
1.57%
T3O
31
1.52%
PMT
30
1.48%
IFR
30
1.48%
CODM/T6ODM
29
1.43%
CAS
29
1.43%
PYKS
28
1.38%
CAD
27
1.33%
TRI/TRII
26
1.28%
CCR
26
1.28%
NCS
23
1.13%
RAS
22
1.08%
HCT
21
1.03%
COMT
21
1.03%
CYP76
21
1.03%
SGD
20
0.98%
SLS
19
0.93%
BR6OX2/CYP85A2
19
0.93%
GS
18
0.89%
16OMT
17
0.84%
DFR
17
0.84%
F3'H/CYP75B
16
0.79%
FNS
16
0.79%
ANR
16
0.79%
DWF4/CYP90B1
16
0.79%
7DLH
15
0.74%
BBE
15
0.74%
TPS
14
0.69%
IO
13
0.64%
CHS
13
0.64%
G8O/G8H
12
0.59%
ANS/LDOX
12
0.59%
COR
11
0.54%
CPR
11
0.54%
CYP90D1
11
0.54%
CYP71
11
0.54%
8HGO
10
0.49%
GES
10
0.49%
BR6OX1/CYP85A1
10
0.49%
CNMT
9
0.44%
GGPPS
9
0.44%
T16H
8
0.39%
F3'5'H/CYP75A
8
0.39%
TAT
8
0.39%
CPD/CYP90A1
8
0.39%
FPPS
8
0.39%
CSE
7
0.34%
AACT
7
0.34%
CYP51G1
6
0.3%
MPO
5
0.25%
CHI
5
0.25%
CCoAOMT
5
0.25%
HPPR
5
0.25%
HMGR
5
0.25%
DXS
5
0.25%
TYDC_DDC
4
0.2%
XMT_MXMT_DXMT
4
0.2%
LAMT
4
0.2%
SMO1/SMO2
4
0.2%
ROT3/CYP90C1
4
0.2%
SQS/FDFT1
4
0.2%
HYD1
4
0.2%
DET2
4
0.2%
MVK
4
0.2%
TDC
3
0.15%
F5H/CYP84A
3
0.15%
MCT/IspD
3
0.15%
IDI
3
0.15%
MDS/IspF
3
0.15%
6OMT_4OMT_SOMT
2
0.1%
ISY
2
0.1%
FLS
2
0.1%
PMK
2
0.1%
MVD
2
0.1%
HMGS
2
0.1%
CYP719
1
0.05%
ODC
1
0.05%
CYP80B1
1
0.05%
ADC
1
0.05%
SQE
1
0.05%
FK
1
0.05%
DWF7
1
0.05%
CPI1
1
0.05%
DWF5
1
0.05%
DWF1
1
0.05%
HDS/IspG
1
0.05%
DXR
1
0.05%
HDR/IspH
1
0.05%
CMK/IspE
1
0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 251 | 20 | BAHD (117) | View species results |
| Alkaloid pathway | 206 | 22 | 7DLGT (38) | View species results |
| Phenylpropanoid pathway | 179 | 11 | POD (96) | View species results |
| Flavonoid pathway | 136 | 11 | UFGT (83) | View species results |
| Steroid pathway | 62 | 14 | CAS (23) | View species results |
| Rosmarinic acid pathway | 49 | 6 | 4CL (20) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 380 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 214 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Oropetium_20150105_00824A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Oropetium_20150105_00828A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Oropetium_20150105_01051A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Oropetium_20150105_01681A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_05670A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Oropetium_20150105_08299A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| Oropetium_20150105_08703A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_08704A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_08844A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Oropetium_20150105_09126A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| Oropetium_20150105_09860A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| Oropetium_20150105_10129A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Oropetium_20150105_10286A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Oropetium_20150105_11240A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| Oropetium_20150105_12198A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_12199A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_12201A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_15486A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| Oropetium_20150105_16715A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_17064A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_17812A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Oropetium_20150105_18073A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| Oropetium_20150105_19971A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| Oropetium_20150105_21364A | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| Oropetium_20150105_21542A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| Oropetium_20150105_23640A | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |