Oryza brachyantha (oryza_brachyantha)
Imported from atlas release summary for Oryza brachyantha.
1473
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1473
Candidate Genes
C4H
6.64%
C3'H/CYP98A
6.29%
BAHD
5.63%
POD
5.2%
UGT
4.35%
T3O
3.96%
7DLGT
3.8%
4CL
3.77%
Other Families
60.35%
More Families (97)
CYP76
133
3.64%
IFS
128
3.5%
UFGT
127
3.47%
F3'H/CYP75B
99
2.71%
DWF4/CYP90B1
94
2.57%
BR6OX2/CYP85A2
89
2.43%
NMT
72
1.97%
CYP71
71
1.94%
STR
64
1.75%
F3H
64
1.75%
SMT1/SMT2/SMT3
54
1.48%
CAD
47
1.29%
PYKS
40
1.09%
TRI/TRII
38
1.04%
G8O/G8H
37
1.01%
CODM/T6ODM
36
0.98%
PMT
36
0.98%
CSE
35
0.96%
SGD
34
0.93%
CAS
33
0.9%
LAC
32
0.88%
TPS
32
0.88%
SLS
31
0.85%
IFR
31
0.85%
H6H
30
0.82%
RAS
30
0.82%
CYP90D1
29
0.79%
GES
28
0.77%
T16H
28
0.77%
CCR
28
0.77%
CYP51G1
27
0.74%
ANR
26
0.71%
FNS
26
0.71%
HCT
26
0.71%
GS
25
0.68%
PAL
24
0.66%
F5H/CYP84A
23
0.63%
CHS
21
0.57%
F3'5'H/CYP75A
20
0.55%
16OMT
18
0.49%
COMT
18
0.49%
NCS
17
0.46%
BBE
17
0.46%
DFR
17
0.46%
IO
16
0.44%
COR
15
0.41%
MPO
14
0.38%
8HGO
14
0.38%
CPD/CYP90A1
14
0.38%
LAMT
12
0.33%
CYP80B1
10
0.27%
BR6OX1/CYP85A1
10
0.27%
TAT
9
0.25%
7DLH
8
0.22%
CNMT
8
0.22%
FPPS
8
0.22%
ANS/LDOX
7
0.19%
ROT3/CYP90C1
7
0.19%
SQS/FDFT1
7
0.19%
AACT
7
0.19%
GGPPS
7
0.19%
CCoAOMT
6
0.16%
CPR
6
0.16%
TYDC_DDC
5
0.14%
TDC
5
0.14%
HPPR
5
0.14%
CYP719
4
0.11%
CHI
4
0.11%
DXS
4
0.11%
MCT/IspD
4
0.11%
MVD
4
0.11%
XMT_MXMT_DXMT
3
0.08%
DET2
3
0.08%
HYD1
3
0.08%
SMO1/SMO2
3
0.08%
DWF1
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
HMGS
3
0.08%
ADC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
CYP80F1
2
0.05%
SQE
2
0.05%
DXR
2
0.05%
CMK/IspE
2
0.05%
MDS/IspF
2
0.05%
PMK
2
0.05%
HDR/IspH
2
0.05%
IDI
2
0.05%
ISY
1
0.03%
ODC
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 410 | 19 | BAHD (143) | View species results |
| Phenylpropanoid pathway | 340 | 11 | POD (176) | View species results |
| Alkaloid pathway | 326 | 25 | 7DLGT (67) | View species results |
| Flavonoid pathway | 193 | 13 | UFGT (109) | View species results |
| Rosmarinic acid pathway | 128 | 7 | C4H (64) | View species results |
| Steroid pathway | 76 | 13 | SMT1/SMT2/SMT3 (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1498 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 262 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OB07G31710.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB07G31720.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB07G31730.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB07G31740.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB07G31750.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB07G32890.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB07G32930.1 | Phenylpropanoid | POD | medium | pass | POD__00020__sp_Q9FE01_APX2_ORYSJ |
| OB08G11120.1 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| OB08G18140.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| OB08G18840.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB08G27710.1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| OB08G28410.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| OB08G29570.1 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| OB09G10790.1 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| OB09G13630.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OB09G13640.1 | Phenylpropanoid | POD | low | borderline | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| OB09G20090.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| OB09G22360.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OB10G10370.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| OB10G10380.1 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| OB10G10690.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| OB10G13630.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OB10G24070.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OB10G24090.1 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| OB10G26060.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OB11G10460.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB11G10490.1 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| OB11G12670.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| OB11G15040.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OB11G17690.1 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| OB11G22710.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| OB11G22720.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| OB11G22730.1 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| OB11G26540.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OB12G13050.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| OB12G14570.1 | Phenylpropanoid | POD | medium | pass | POD__00015__sp_Q69SV0_APX8_ORYSJ |
| OB12G15090.1 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| OB12G21600.1 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| OB12G26700.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| OB12G26710.1 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |