PlantSME Plant secondary metabolism enzyme database

Oryza brachyantha (oryza_brachyantha)

Imported from atlas release summary for Oryza brachyantha.

1473
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 27.83% Phenylpropanoid pathway 23.08% Alkaloid pathway 22.13% Flavonoid pathway 13.1% Rosmarinic acid pathway 8.69% Steroid pathway 5.16%
Family Distribution
C4H 6.64% C3'H/CYP98A 6.29% BAHD 5.63% POD 5.2% UGT 4.35% T3O 3.96% 7DLGT 3.8% 4CL 3.77%
Other Families 60.35%
More Families (97)
CYP76 133 3.64% IFS 128 3.5% UFGT 127 3.47% F3'H/CYP75B 99 2.71% DWF4/CYP90B1 94 2.57% BR6OX2/CYP85A2 89 2.43% NMT 72 1.97% CYP71 71 1.94% STR 64 1.75% F3H 64 1.75% SMT1/SMT2/SMT3 54 1.48% CAD 47 1.29% PYKS 40 1.09% TRI/TRII 38 1.04% G8O/G8H 37 1.01% CODM/T6ODM 36 0.98% PMT 36 0.98% CSE 35 0.96% SGD 34 0.93% CAS 33 0.9% LAC 32 0.88% TPS 32 0.88% SLS 31 0.85% IFR 31 0.85% H6H 30 0.82% RAS 30 0.82% CYP90D1 29 0.79% GES 28 0.77% T16H 28 0.77% CCR 28 0.77% CYP51G1 27 0.74% ANR 26 0.71% FNS 26 0.71% HCT 26 0.71% GS 25 0.68% PAL 24 0.66% F5H/CYP84A 23 0.63% CHS 21 0.57% F3'5'H/CYP75A 20 0.55% 16OMT 18 0.49% COMT 18 0.49% NCS 17 0.46% BBE 17 0.46% DFR 17 0.46% IO 16 0.44% COR 15 0.41% MPO 14 0.38% 8HGO 14 0.38% CPD/CYP90A1 14 0.38% LAMT 12 0.33% CYP80B1 10 0.27% BR6OX1/CYP85A1 10 0.27% TAT 9 0.25% 7DLH 8 0.22% CNMT 8 0.22% FPPS 8 0.22% ANS/LDOX 7 0.19% ROT3/CYP90C1 7 0.19% SQS/FDFT1 7 0.19% AACT 7 0.19% GGPPS 7 0.19% CCoAOMT 6 0.16% CPR 6 0.16% TYDC_DDC 5 0.14% TDC 5 0.14% HPPR 5 0.14% CYP719 4 0.11% CHI 4 0.11% DXS 4 0.11% MCT/IspD 4 0.11% MVD 4 0.11% XMT_MXMT_DXMT 3 0.08% DET2 3 0.08% HYD1 3 0.08% SMO1/SMO2 3 0.08% DWF1 3 0.08% MVK 3 0.08% HMGR 3 0.08% HMGS 3 0.08% ADC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% CYP80F1 2 0.05% SQE 2 0.05% DXR 2 0.05% CMK/IspE 2 0.05% MDS/IspF 2 0.05% PMK 2 0.05% HDR/IspH 2 0.05% IDI 2 0.05% ISY 1 0.03% ODC 1 0.03% FLS 1 0.03% DWF7 1 0.03% DWF5 1 0.03% FK 1 0.03% CPI1 1 0.03% HDS/IspG 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 410 19 BAHD (143) View species results
Phenylpropanoid pathway 340 11 POD (176) View species results
Alkaloid pathway 326 25 7DLGT (67) View species results
Flavonoid pathway 193 13 UFGT (109) View species results
Rosmarinic acid pathway 128 7 C4H (64) View species results
Steroid pathway 76 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1498 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 262 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
OB02G27350.1 Alkaloid TDC low borderline
OB08G12700.1 Alkaloid TDC medium borderline
OB10G10320.1 Alkaloid TDC low borderline
OB10G14880.1 Alkaloid TDC low borderline
OB11G19660.1 Alkaloid TDC low borderline