Oryza brachyantha (oryza_brachyantha)
Imported from atlas release summary for Oryza brachyantha.
1726
Candidate Protein Records
1473
Pathway-Level Records
3657
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
3657
Family-Level Calls
C4H
6.64%
C3'H/CYP98A
6.29%
BAHD
5.63%
POD
5.2%
UGT
4.35%
T3O
3.96%
7DLGT
3.8%
4CL
3.77%
Other Families
60.35%
More Families (97)
CYP76
133
3.64%
IFS
128
3.5%
UFGT
127
3.47%
F3'H/CYP75B
99
2.71%
DWF4/CYP90B1
94
2.57%
BR6OX2/CYP85A2
89
2.43%
NMT
72
1.97%
CYP71
71
1.94%
STR
64
1.75%
F3H
64
1.75%
SMT1/SMT2/SMT3
54
1.48%
CAD
47
1.29%
PYKS
40
1.09%
TRI/TRII
38
1.04%
G8O/G8H
37
1.01%
CODM/T6ODM
36
0.98%
PMT
36
0.98%
CSE
35
0.96%
SGD
34
0.93%
CAS
33
0.9%
LAC
32
0.88%
TPS
32
0.88%
SLS
31
0.85%
IFR
31
0.85%
H6H
30
0.82%
RAS
30
0.82%
CYP90D1
29
0.79%
GES
28
0.77%
T16H
28
0.77%
CCR
28
0.77%
CYP51G1
27
0.74%
ANR
26
0.71%
FNS
26
0.71%
HCT
26
0.71%
GS
25
0.68%
PAL
24
0.66%
F5H/CYP84A
23
0.63%
CHS
21
0.57%
F3'5'H/CYP75A
20
0.55%
16OMT
18
0.49%
COMT
18
0.49%
NCS
17
0.46%
BBE
17
0.46%
DFR
17
0.46%
IO
16
0.44%
COR
15
0.41%
MPO
14
0.38%
8HGO
14
0.38%
CPD/CYP90A1
14
0.38%
LAMT
12
0.33%
CYP80B1
10
0.27%
BR6OX1/CYP85A1
10
0.27%
TAT
9
0.25%
7DLH
8
0.22%
CNMT
8
0.22%
FPPS
8
0.22%
ANS/LDOX
7
0.19%
ROT3/CYP90C1
7
0.19%
SQS/FDFT1
7
0.19%
AACT
7
0.19%
GGPPS
7
0.19%
CCoAOMT
6
0.16%
CPR
6
0.16%
TYDC_DDC
5
0.14%
TDC
5
0.14%
HPPR
5
0.14%
CYP719
4
0.11%
CHI
4
0.11%
DXS
4
0.11%
MCT/IspD
4
0.11%
MVD
4
0.11%
XMT_MXMT_DXMT
3
0.08%
DET2
3
0.08%
HYD1
3
0.08%
SMO1/SMO2
3
0.08%
DWF1
3
0.08%
MVK
3
0.08%
HMGR
3
0.08%
HMGS
3
0.08%
ADC
2
0.05%
6OMT_4OMT_SOMT
2
0.05%
CYP80F1
2
0.05%
SQE
2
0.05%
DXR
2
0.05%
CMK/IspE
2
0.05%
MDS/IspF
2
0.05%
PMK
2
0.05%
HDR/IspH
2
0.05%
IDI
2
0.05%
ISY
1
0.03%
ODC
1
0.03%
FLS
1
0.03%
DWF7
1
0.03%
DWF5
1
0.03%
FK
1
0.03%
CPI1
1
0.03%
HDS/IspG
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 410 | 19 | BAHD (143) | View species results |
| Phenylpropanoid pathway | 340 | 11 | POD (176) | View species results |
| Alkaloid pathway | 326 | 25 | 7DLGT (67) | View species results |
| Flavonoid pathway | 193 | 13 | UFGT (109) | View species results |
| Rosmarinic acid pathway | 128 | 7 | C4H (64) | View species results |
| Steroid pathway | 76 | 13 | SMT1/SMT2/SMT3 (34) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1498 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 262 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| OB05G25550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB06G24090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB06G25940.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB06G28370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB06G31640.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB07G14420.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB07G17590.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB07G22360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB07G22370.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB07G23550.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB07G23560.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB07G23570.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB08G21270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB08G29130.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB09G10610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB09G14020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB09G15440.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB09G15450.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB09G16270.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB09G20200.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB10G14110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB10G18860.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB10G21450.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB10G24470.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB11G12120.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB11G18440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB11G23880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB12G10060.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB12G12590.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB12G12600.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| OB12G16540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB12G16570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB12G18410.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| OB0072G10040.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| OB0116G10020.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB01G18240.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB01G36940.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB02G24360.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB02G24380.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB02G30470.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB02G30480.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB03G31180.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| OB03G31200.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB03G35840.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB04G11110.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB04G11120.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| OB04G11320.1 | Alkaloid | T16H | medium | borderline | T16H__00002__sp_U5HKE8_C71DZ_CATRO |
| OB04G11970.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB04G12340.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |
| OB07G14780.1 | Alkaloid | T16H | medium | borderline | T16H__00001__sp_P98183_C71DC_CATRO |