PlantSME Plant secondary metabolism enzyme database

Panax japonicus (panax_japonicus)

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Imported from atlas release summary for Panax japonicus.

2933
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.38% Alkaloid pathway 21.1% Phenylpropanoid pathway 21.04% Flavonoid pathway 12.14% Rosmarinic acid pathway 8.56% Steroid pathway 6.78%
Family Distribution
BAHD 5.92% C4H 5.21% C3'H/CYP98A 4.98% 4CL 4.61% UGT 4.4% POD 4.37% 7DLGT 3.53% UFGT 3.34%
Other Families 63.65%
More Families (97)
IFS 224 3.19% F3H 204 2.9% NMT 192 2.73% CYP76 190 2.7% T3O 186 2.65% DWF4/CYP90B1 148 2.11% BBE 141 2.01% STR 132 1.88% CODM/T6ODM 123 1.75% F3'H/CYP75B 116 1.65% CAD 105 1.49% TRI/TRII 100 1.42% CYP71 97 1.38% CAS 96 1.37% H6H 89 1.27% BR6OX2/CYP85A2 89 1.27% SMT1/SMT2/SMT3 88 1.25% LAC 80 1.14% HCT 79 1.12% IFR 77 1.1% CYP90D1 77 1.1% CSE 76 1.08% GS 70 1.0% TPS 67 0.95% GES 65 0.92% PYKS 60 0.85% PAL 60 0.85% RAS 60 0.85% TAT 56 0.8% G8O/G8H 52 0.74% 7DLH 50 0.71% T16H 47 0.67% SLS 45 0.64% F5H/CYP84A 44 0.63% COMT 44 0.63% PMT 43 0.61% SGD 42 0.6% FNS 40 0.57% F3'5'H/CYP75A 40 0.57% NCS 38 0.54% IO 38 0.54% ANR 36 0.51% COR 35 0.5% CCR 34 0.48% CYP51G1 30 0.43% 8HGO 29 0.41% ANS/LDOX 28 0.4% CPR 28 0.4% CPD/CYP90A1 27 0.38% GGPPS 27 0.38% 16OMT 26 0.37% CCoAOMT 26 0.37% BR6OX1/CYP85A1 26 0.37% LAMT 24 0.34% DFR 21 0.3% DET2 21 0.3% DXS 21 0.3% CNMT 20 0.28% AACT 20 0.28% CYP719 19 0.27% SQE 18 0.26% MPO 17 0.24% HPPR 16 0.23% CHS 15 0.21% HMGR 15 0.21% CYP80B1 14 0.2% ISY 14 0.2% SQS/FDFT1 14 0.2% TDC 13 0.18% FPPS 13 0.18% ROT3/CYP90C1 12 0.17% SMO1/SMO2 11 0.16% ADC 9 0.13% CHI 9 0.13% MCT/IspD 9 0.13% TYDC_DDC 8 0.11% PMK 8 0.11% HDR/IspH 8 0.11% HDS/IspG 8 0.11% XMT_MXMT_DXMT 7 0.1% MVK 7 0.1% HYD1 6 0.09% HMGS 6 0.09% MDS/IspF 6 0.09% DWF7 5 0.07% IDI 5 0.07% DXR 5 0.07% CMK/IspE 4 0.06% MVD 4 0.06% 6OMT_4OMT_SOMT 3 0.04% FLS 3 0.04% CPI1 3 0.04% FK 3 0.04% DWF5 3 0.04% ODC 2 0.03% DWF1 2 0.03% CYP80F1 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 891 19 BAHD (343) View species results
Alkaloid pathway 619 23 NMT (106) View species results
Phenylpropanoid pathway 617 12 POD (272) View species results
Flavonoid pathway 356 12 UFGT (209) View species results
Rosmarinic acid pathway 251 7 C4H (63) View species results
Steroid pathway 199 14 CAS (80) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2288 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 555 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHI
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Gene Pathway Family Confidence Status
panax_japonicus_GWHPBEIH003904.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH003949.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH007812.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH042851.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH045420.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH051249.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH054532.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH058293.1 Flavonoid CHI medium pass
panax_japonicus_GWHPBEIH060620.1 Flavonoid CHI low borderline