Panax japonicus (panax_japonicus)
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Imported from atlas release summary for Panax japonicus.
2933
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2933
Candidate Genes
BAHD
5.92%
C4H
5.21%
C3'H/CYP98A
4.98%
4CL
4.61%
UGT
4.4%
POD
4.37%
7DLGT
3.53%
UFGT
3.34%
Other Families
63.65%
More Families (97)
IFS
224
3.19%
F3H
204
2.9%
NMT
192
2.73%
CYP76
190
2.7%
T3O
186
2.65%
DWF4/CYP90B1
148
2.11%
BBE
141
2.01%
STR
132
1.88%
CODM/T6ODM
123
1.75%
F3'H/CYP75B
116
1.65%
CAD
105
1.49%
TRI/TRII
100
1.42%
CYP71
97
1.38%
CAS
96
1.37%
H6H
89
1.27%
BR6OX2/CYP85A2
89
1.27%
SMT1/SMT2/SMT3
88
1.25%
LAC
80
1.14%
HCT
79
1.12%
IFR
77
1.1%
CYP90D1
77
1.1%
CSE
76
1.08%
GS
70
1.0%
TPS
67
0.95%
GES
65
0.92%
PYKS
60
0.85%
PAL
60
0.85%
RAS
60
0.85%
TAT
56
0.8%
G8O/G8H
52
0.74%
7DLH
50
0.71%
T16H
47
0.67%
SLS
45
0.64%
F5H/CYP84A
44
0.63%
COMT
44
0.63%
PMT
43
0.61%
SGD
42
0.6%
FNS
40
0.57%
F3'5'H/CYP75A
40
0.57%
NCS
38
0.54%
IO
38
0.54%
ANR
36
0.51%
COR
35
0.5%
CCR
34
0.48%
CYP51G1
30
0.43%
8HGO
29
0.41%
ANS/LDOX
28
0.4%
CPR
28
0.4%
CPD/CYP90A1
27
0.38%
GGPPS
27
0.38%
16OMT
26
0.37%
CCoAOMT
26
0.37%
BR6OX1/CYP85A1
26
0.37%
LAMT
24
0.34%
DFR
21
0.3%
DET2
21
0.3%
DXS
21
0.3%
CNMT
20
0.28%
AACT
20
0.28%
CYP719
19
0.27%
SQE
18
0.26%
MPO
17
0.24%
HPPR
16
0.23%
CHS
15
0.21%
HMGR
15
0.21%
CYP80B1
14
0.2%
ISY
14
0.2%
SQS/FDFT1
14
0.2%
TDC
13
0.18%
FPPS
13
0.18%
ROT3/CYP90C1
12
0.17%
SMO1/SMO2
11
0.16%
ADC
9
0.13%
CHI
9
0.13%
MCT/IspD
9
0.13%
TYDC_DDC
8
0.11%
PMK
8
0.11%
HDR/IspH
8
0.11%
HDS/IspG
8
0.11%
XMT_MXMT_DXMT
7
0.1%
MVK
7
0.1%
HYD1
6
0.09%
HMGS
6
0.09%
MDS/IspF
6
0.09%
DWF7
5
0.07%
IDI
5
0.07%
DXR
5
0.07%
CMK/IspE
4
0.06%
MVD
4
0.06%
6OMT_4OMT_SOMT
3
0.04%
FLS
3
0.04%
CPI1
3
0.04%
FK
3
0.04%
DWF5
3
0.04%
ODC
2
0.03%
DWF1
2
0.03%
CYP80F1
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 891 | 19 | BAHD (343) | View species results |
| Alkaloid pathway | 619 | 23 | NMT (106) | View species results |
| Phenylpropanoid pathway | 617 | 12 | POD (272) | View species results |
| Flavonoid pathway | 356 | 12 | UFGT (209) | View species results |
| Rosmarinic acid pathway | 251 | 7 | C4H (63) | View species results |
| Steroid pathway | 199 | 14 | CAS (80) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2288 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 555 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| panax_japonicus_GWHPBEIH038818.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| panax_japonicus_GWHPBEIH039554.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| panax_japonicus_GWHPBEIH039579.1 | Alkaloid | NMT | medium | pass | NMT__00024__sp_P0CB22_ATX2_ARATH |
| panax_japonicus_GWHPBEIH039872.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| panax_japonicus_GWHPBEIH040025.1 | Alkaloid | NMT | medium | pass | NMT__00067__sp_Q9T0G7_SUVH9_ARATH |
| panax_japonicus_GWHPBEIH040369.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| panax_japonicus_GWHPBEIH040574.1 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| panax_japonicus_GWHPBEIH040954.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| panax_japonicus_GWHPBEIH041454.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| panax_japonicus_GWHPBEIH043321.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| panax_japonicus_GWHPBEIH044071.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| panax_japonicus_GWHPBEIH044954.1 | Alkaloid | NMT | low | borderline | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| panax_japonicus_GWHPBEIH045100.1 | Alkaloid | NMT | low | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| panax_japonicus_GWHPBEIH045899.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| panax_japonicus_GWHPBEIH045935.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| panax_japonicus_GWHPBEIH045986.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| panax_japonicus_GWHPBEIH046014.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| panax_japonicus_GWHPBEIH046654.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| panax_japonicus_GWHPBEIH046679.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| panax_japonicus_GWHPBEIH046741.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| panax_japonicus_GWHPBEIH046776.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| panax_japonicus_GWHPBEIH047026.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| panax_japonicus_GWHPBEIH047179.1 | Alkaloid | NMT | low | borderline | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| panax_japonicus_GWHPBEIH047324.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| panax_japonicus_GWHPBEIH047572.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| panax_japonicus_GWHPBEIH047799.1 | Alkaloid | NMT | low | borderline | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| panax_japonicus_GWHPBEIH047837.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| panax_japonicus_GWHPBEIH048421.1 | Alkaloid | NMT | low | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| panax_japonicus_GWHPBEIH048642.1 | Alkaloid | NMT | medium | pass | NMT__00032__sp_Q5PP37_ATXR2_ARATH |
| panax_japonicus_GWHPBEIH048657.1 | Alkaloid | NMT | medium | pass | NMT__00020__sp_O23372_ATXR3_ARATH |
| panax_japonicus_GWHPBEIH050025.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| panax_japonicus_GWHPBEIH050405.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| panax_japonicus_GWHPBEIH050826.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| panax_japonicus_GWHPBEIH050897.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| panax_japonicus_GWHPBEIH051411.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| panax_japonicus_GWHPBEIH051430.1 | Alkaloid | NMT | low | borderline | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| panax_japonicus_GWHPBEIH051777.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| panax_japonicus_GWHPBEIH051979.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| panax_japonicus_GWHPBEIH052219.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| panax_japonicus_GWHPBEIH052568.1 | Alkaloid | NMT | medium | borderline | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| panax_japonicus_GWHPBEIH053322.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| panax_japonicus_GWHPBEIH053726.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| panax_japonicus_GWHPBEIH053803.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| panax_japonicus_GWHPBEIH054099.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| panax_japonicus_GWHPBEIH054177.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| panax_japonicus_GWHPBEIH054673.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| panax_japonicus_GWHPBEIH055292.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| panax_japonicus_GWHPBEIH055582.1 | Alkaloid | NMT | medium | pass | NMT__00041__sp_Q8GWT4_ANM15_ARATH |
| panax_japonicus_GWHPBEIH055998.1 | Alkaloid | NMT | medium | pass | NMT__00057__sp_Q9FR44_PEAM1_ARATH |
| panax_japonicus_GWHPBEIH055999.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |