PlantSME Plant secondary metabolism enzyme database

Panicum miliaceum (panicum_miliaceum)

Imported from atlas release summary for Panicum miliaceum.

3287
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.11% Alkaloid pathway 21.9% Phenylpropanoid pathway 21.63% Flavonoid pathway 12.47% Rosmarinic acid pathway 9.61% Steroid pathway 6.27%
Family Distribution
IO 10.47% C4H 6.04% C3'H/CYP98A 5.73% BAHD 5.28% POD 4.44% IFS 3.5% T3O 3.33% UGT 3.33%
Other Families 57.87%
More Families (98)
CYP76 298 3.31% 4CL 297 3.3% 7DLGT 280 3.11% UFGT 276 3.07% DWF4/CYP90B1 207 2.3% BR6OX2/CYP85A2 196 2.18% F3'H/CYP75B 189 2.1% NMT 179 1.99% F3H 164 1.82% CYP71 146 1.62% STR 137 1.52% CAS 121 1.34% G8O/G8H 97 1.08% SGD 93 1.03% LAC 93 1.03% SMT1/SMT2/SMT3 93 1.03% H6H 91 1.01% TPS 90 1.0% SLS 81 0.9% RAS 79 0.88% PYKS 76 0.84% HCT 76 0.84% CAD 71 0.79% CODM/T6ODM 70 0.78% T16H 68 0.76% GES 66 0.73% CCR 66 0.73% FNS 63 0.7% CYP90D1 61 0.68% PMT 59 0.66% F5H/CYP84A 59 0.66% IFR 57 0.63% F3'5'H/CYP75A 57 0.63% TRI/TRII 55 0.61% SQS/FDFT1 55 0.61% NCS 54 0.6% ANR 51 0.57% COR 47 0.52% CSE 47 0.52% COMT 44 0.49% CYP51G1 43 0.48% GS 42 0.47% 16OMT 41 0.46% CPD/CYP90A1 40 0.44% 7DLH 37 0.41% BR6OX1/CYP85A1 36 0.4% 8HGO 33 0.37% PAL 33 0.37% ANS/LDOX 30 0.33% FPPS 30 0.33% DFR 29 0.32% BBE 28 0.31% CHS 25 0.28% TAT 24 0.27% GGPPS 21 0.23% CPR 20 0.22% CNMT 19 0.21% TYDC_DDC 18 0.2% CCoAOMT 16 0.18% SMO1/SMO2 15 0.17% CYP80B1 14 0.16% DXS 14 0.16% MPO 13 0.14% MVK 13 0.14% MVD 13 0.14% DWF1 12 0.13% XMT_MXMT_DXMT 10 0.11% LAMT 9 0.1% HPPR 9 0.1% AACT 9 0.1% ROT3/CYP90C1 8 0.09% MCT/IspD 8 0.09% HMGS 7 0.08% ODC 6 0.07% CYP719 6 0.07% CYP80F1 6 0.07% DET2 6 0.07% HYD1 6 0.07% 6OMT_4OMT_SOMT 5 0.06% TDC 5 0.06% HDR/IspH 5 0.06% ADC 4 0.04% FK 4 0.04% SQE 3 0.03% PMK 3 0.03% ISY 2 0.02% FLS 2 0.02% CHI 2 0.02% CPI1 2 0.02% DWF7 2 0.02% IDI 2 0.02% DXR 2 0.02% CMK/IspE 2 0.02% HMGR 2 0.02% MDS/IspF 2 0.02% DWF5 1 0.01% GPPS 1 0.01% HDS/IspG 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 924 19 BAHD (365) View species results
Alkaloid pathway 720 25 7DLGT (131) View species results
Phenylpropanoid pathway 711 13 POD (376) View species results
Flavonoid pathway 410 13 UFGT (256) View species results
Rosmarinic acid pathway 316 7 C4H (153) View species results
Steroid pathway 206 13 CAS (102) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4267 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 630 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DET2
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Gene Pathway Family Confidence Status Best Target
Pmil02G0038880.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
Pmil05G0006060.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
Pmil05G0037330.1 Steroid DET2 medium pass DET2__00001__sp_I1HTF7_DET2_BRADI
Pmil08G0007900.1 Steroid DET2 medium pass DET2__00001__sp_I1HTF7_DET2_BRADI
Pmil11G0035570.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI
Pmil11G0035600.1 Steroid DET2 low borderline DET2__00002__sp_Q2QDF6_DET2_GOSHI