Papaver setigerum (papaver_setigerum)
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Imported from atlas release summary for Papaver setigerum.
5892
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
5892
Candidate Genes
C4H
7.14%
C3'H/CYP98A
6.8%
BAHD
5.33%
IFS
4.63%
CYP76
4.55%
POD
3.88%
UGT
3.51%
T3O
3.48%
Other Families
60.7%
More Families (98)
7DLGT
513
3.12%
4CL
498
3.03%
UFGT
487
2.96%
DWF4/CYP90B1
416
2.53%
BR6OX2/CYP85A2
351
2.13%
F3H
345
2.1%
F3'H/CYP75B
335
2.04%
CYP71
298
1.81%
NMT
283
1.72%
CODM/T6ODM
263
1.6%
STR
243
1.48%
IO
239
1.45%
HCT
213
1.29%
T16H
205
1.25%
CYP90D1
202
1.23%
G8O/G8H
178
1.08%
H6H
177
1.08%
TRI/TRII
171
1.04%
COMT
170
1.03%
F5H/CYP84A
168
1.02%
F3'5'H/CYP75A
165
1.0%
CAD
161
0.98%
NCS
156
0.95%
CAS
144
0.88%
TAT
136
0.83%
PYKS
134
0.81%
RAS
134
0.81%
SMT1/SMT2/SMT3
134
0.81%
16OMT
123
0.75%
FNS
121
0.74%
SGD
114
0.69%
BBE
112
0.68%
PMT
107
0.65%
LAC
101
0.61%
BR6OX1/CYP85A1
101
0.61%
GS
100
0.61%
CSE
98
0.6%
IFR
97
0.59%
7DLH
89
0.54%
TYDC_DDC
89
0.54%
CPD/CYP90A1
88
0.53%
ANR
87
0.53%
CYP51G1
86
0.52%
COR
84
0.51%
CCR
79
0.48%
GES
75
0.46%
TPS
75
0.46%
CYP719
74
0.45%
ANS/LDOX
69
0.42%
CNMT
67
0.41%
PAL
60
0.36%
ROT3/CYP90C1
59
0.36%
LAMT
57
0.35%
SLS
57
0.35%
FPPS
52
0.32%
8HGO
51
0.31%
CCoAOMT
40
0.24%
DFR
35
0.21%
CYP80B1
33
0.2%
CHS
33
0.2%
MPO
32
0.19%
CPR
32
0.19%
GGPPS
30
0.18%
CHI
29
0.18%
CPI1
29
0.18%
AACT
29
0.18%
SQS/FDFT1
28
0.17%
6OMT_4OMT_SOMT
26
0.16%
MVK
23
0.14%
DET2
22
0.13%
GPPS
22
0.13%
HPPR
19
0.12%
DXS
18
0.11%
SMO1/SMO2
16
0.1%
SQE
16
0.1%
TDC
15
0.09%
MVD
13
0.08%
ISY
12
0.07%
HDR/IspH
12
0.07%
CYP80F1
11
0.07%
FLS
10
0.06%
HYD1
9
0.05%
IDI
9
0.05%
HMGR
9
0.05%
ODC
8
0.05%
XMT_MXMT_DXMT
8
0.05%
HDS/IspG
8
0.05%
DXR
8
0.05%
DWF5
7
0.04%
MCT/IspD
7
0.04%
DWF1
6
0.04%
ADC
5
0.03%
DWF7
5
0.03%
PMK
5
0.03%
FK
4
0.02%
HMGS
4
0.02%
CMK/IspE
3
0.02%
MDS/IspF
3
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1642 | 22 | BAHD (606) | View species results |
| Phenylpropanoid pathway | 1340 | 11 | POD (602) | View species results |
| Alkaloid pathway | 1330 | 28 | 7DLGT (230) | View species results |
| Flavonoid pathway | 704 | 14 | UFGT (437) | View species results |
| Rosmarinic acid pathway | 561 | 7 | C4H (221) | View species results |
| Steroid pathway | 315 | 16 | CAS (130) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 7528 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1224 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: XMT_MXMT_DXMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Papaver_setigerum_Pse04G29890.0 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00002__sp_A0A0S2PM92_TCS1F_CAMCR |
| Papaver_setigerum_Pse06G11670.0 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00001__sp_A0A0S2PM82_TCS3_CAMSI |
| Papaver_setigerum_Pse06G11680.0 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00007__sp_Q8H0D2_DXMT1_COFAR |
| Papaver_setigerum_Pse06G26280.0 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00005__sp_A4GE69_XMT1_COFCA |
| Papaver_setigerum_Pse07G42580.0 | Alkaloid | XMT_MXMT_DXMT | medium | pass | XMT_MXMT_DXMT__00009__sp_Q9AVK0_XMT1_COFAR |
| Papaver_setigerum_Pse11G38280.0 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00007__sp_Q8H0D2_DXMT1_COFAR |
| Papaver_setigerum_Pse15G13790.0 | Alkaloid | XMT_MXMT_DXMT | low | borderline | XMT_MXMT_DXMT__00003__sp_A0A0S2PMA8_TCS1D_CAMTA |
| Papaver_setigerum_Pse17G01990.0 | Alkaloid | XMT_MXMT_DXMT | medium | borderline | XMT_MXMT_DXMT__00004__sp_A0A6C0WW38_CKCS_CAMSB |