PlantSME Plant secondary metabolism enzyme database

Perilla citriodora (perilla_citriodora)

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Imported from atlas release summary for Perilla citriodora.

1523
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.37% Alkaloid pathway 21.54% Phenylpropanoid pathway 16.68% Flavonoid pathway 13.92% Rosmarinic acid pathway 10.9% Steroid pathway 4.6%
Family Distribution
C3'H/CYP98A 7.91% C4H 7.76% IFS 5.2% T3O 5.06% CYP76 4.94% BAHD 4.48% UGT 4.22% 7DLGT 4.05%
Other Families 56.4%
More Families (94)
UFGT 166 3.98% DWF4/CYP90B1 128 3.07% 4CL 111 2.66% F3'H/CYP75B 105 2.52% POD 100 2.4% BR6OX2/CYP85A2 100 2.4% F3H 98 2.35% CODM/T6ODM 68 1.63% TPS 68 1.63% CYP71 67 1.61% CAD 65 1.56% GES 62 1.49% STR 54 1.29% NMT 52 1.25% CAS 49 1.17% HCT 46 1.1% CYP90D1 41 0.98% T16H 39 0.93% GS 34 0.81% LAC 34 0.81% PYKS 33 0.79% 7DLH 33 0.79% CPD/CYP90A1 33 0.79% TRI/TRII 32 0.77% CSE 31 0.74% SMT1/SMT2/SMT3 31 0.74% PMT 30 0.72% H6H 30 0.72% RAS 30 0.72% TAT 29 0.69% SLS 28 0.67% IO 27 0.65% NCS 26 0.62% IFR 26 0.62% F5H/CYP84A 26 0.62% ANR 25 0.6% COMT 22 0.53% CYP51G1 21 0.5% FNS 20 0.48% 16OMT 17 0.41% LAMT 17 0.41% G8O/G8H 16 0.38% F3'5'H/CYP75A 16 0.38% SGD 15 0.36% CCR 15 0.36% BBE 13 0.31% PAL 12 0.29% BR6OX1/CYP85A1 12 0.29% COR 11 0.26% CHS 11 0.26% 8HGO 10 0.24% ROT3/CYP90C1 10 0.24% FPPS 10 0.24% CNMT 9 0.22% CYP80B1 9 0.22% HPPR 8 0.19% CPR 8 0.19% DET2 8 0.19% HMGR 7 0.17% TYDC_DDC 6 0.14% DXS 6 0.14% GGPPS 6 0.14% MPO 5 0.12% CYP80F1 5 0.12% DFR 5 0.12% CCoAOMT 5 0.12% SQE 5 0.12% SQS/FDFT1 5 0.12% AACT 5 0.12% CYP719 4 0.1% ANS/LDOX 4 0.1% MVK 4 0.1% MVD 4 0.1% 6OMT_4OMT_SOMT 3 0.07% ISY 2 0.05% ADC 2 0.05% CHI 2 0.05% SMO1/SMO2 2 0.05% CPI1 2 0.05% MCT/IspD 2 0.05% HDR/IspH 2 0.05% DXR 2 0.05% TDC 1 0.02% FLS 1 0.02% HYD1 1 0.02% FK 1 0.02% DWF7 1 0.02% DWF1 1 0.02% DWF5 1 0.02% IDI 1 0.02% HMGS 1 0.02% CMK/IspE 1 0.02% HDS/IspG 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (165) View species results
Alkaloid pathway 328 22 7DLGT (82) View species results
Phenylpropanoid pathway 254 12 POD (91) View species results
Flavonoid pathway 212 9 UFGT (156) View species results
Rosmarinic acid pathway 166 7 C4H (90) View species results
Steroid pathway 70 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2008 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 263 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
perilla_citriodora_KAH6766673.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
perilla_citriodora_KAH6775802.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
perilla_citriodora_KAH6776705.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
perilla_citriodora_KAH6776706.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
perilla_citriodora_KAH6793142.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
perilla_citriodora_KAH6793143.1 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO