PlantSME Plant secondary metabolism enzyme database

Physcomitrella patens (physcomitrella_patens)

Imported from atlas release summary for Physcomitrella patens.

2845
Candidate Protein Records
1885
Pathway-Level Records
4577
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 556 19 BAHD (308) View species results
Phenylpropanoid pathway 489 12 POD (277) View species results
Alkaloid pathway 391 17 NMT (72) View species results
Flavonoid pathway 162 9 UFGT (46) View species results
Rosmarinic acid pathway 152 7 C4H (49) View species results
Steroid pathway 135 13 CAS (37) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 23 1256 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 460 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Protein/Isoform Record Pathway Family Confidence Status Best Target
Ppat22G0003680.3 Rosmarinic Acid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Ppat22G0003680.4 Rosmarinic Acid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Ppat22G0003680.5 Rosmarinic Acid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Ppat22G0003680.6 Rosmarinic Acid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Ppat22G0003680.7 Rosmarinic Acid 4CL low borderline 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ
Ppat22G0004240.1 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Ppat22G0004250.1 Rosmarinic Acid 4CL medium pass 4CL__00012__sp_Q84P21_4CLL5_ARATH
Ppat22G0007020.1 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Ppat22G0007020.2 Rosmarinic Acid 4CL medium pass 4CL__00004__sp_O24146_4CL2_TOBAC
Ppat23G0007600.1 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Ppat23G0007600.2 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Ppat23G0007600.3 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Ppat23G0007600.4 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Ppat23G0007600.5 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Ppat23G0007600.6 Rosmarinic Acid 4CL low borderline 4CL__00014__sp_Q84P24_4CLL6_ARATH
Ppat24G0001760.1 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Ppat24G0001760.2 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Ppat24G0001760.3 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Ppat24G0001760.4 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Ppat24G0001760.5 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Ppat24G0001760.6 Rosmarinic Acid 4CL medium pass 4CL__00019__sp_Q9SMT7_4CLLA_ARATH
Ppat26G0005450.1 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Ppat26G0005450.2 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Ppat26G0005450.3 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Ppat26G0005450.4 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Ppat26G0005450.5 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH
Ppat26G0005450.6 Rosmarinic Acid 4CL medium pass 4CL__00016__sp_Q9M0X9_4CLL7_ARATH